View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3735_low_6 (Length: 385)
Name: NF3735_low_6
Description: NF3735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3735_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 11 - 370
Target Start/End: Original strand, 7175206 - 7175565
Alignment:
| Q |
11 |
cttcttcaacatcaagaggccctgcttaacccttagtttctaggaacattcacttacatttcccaactcaatgaagaattcaatgttcttgacaaaactg |
110 |
Q |
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| T |
7175206 |
cttcttcaacatcaagaggccctgcttaacccttagtttctaggaacattcacttacatttcccaactcaatgaagaattcaatgttcttgacaaaactg |
7175305 |
T |
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| Q |
111 |
atacaatctcatccatagcaggtctatttcctggatccttgtttaaacaattctgaataatttcaatcacaaacatagcaagttcaaatggataatttcc |
210 |
Q |
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| T |
7175306 |
gtacaatctcatccatagcaggtctatttcctggatccttgtttaaacaattctgaataatttcaatcacaaacatagcaagttcaaatggataatttcc |
7175405 |
T |
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| Q |
211 |
ttgcaatgaaggatccataaactccttcaacttctcatcaccacttttctcaccaagtattccactcaaaacatccaacaaattctcattatcttttgat |
310 |
Q |
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| T |
7175406 |
ttgcaatgaaggatccataaactccttcaacttctcatcaccacttttctcaccaagtattccactcaaaacatccaacaaattctcattatcttttgat |
7175505 |
T |
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| Q |
311 |
atcataaaaccaacctcttttcctgtaataatttccaacatcaaaataccaaatgcatac |
370 |
Q |
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| T |
7175506 |
atcataaaaccaacctcttttcctgtaataatttccaacatcaaaataccaaatgcatac |
7175565 |
T |
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