View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3735_low_7 (Length: 378)
Name: NF3735_low_7
Description: NF3735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3735_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 11 - 362
Target Start/End: Original strand, 14283211 - 14283562
Alignment:
| Q |
11 |
cacagataatggaagattaaccaaagagaatatgtcatctattctcaaattaagctccaactttgtttcaccaacggttatcattcgaacaatagctgaa |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14283211 |
cacagataatggaagattaaccaaagagaatatgtcatctattctcaaattaagctccaactttgtttcaccaacggttatcattcgaacaatagctgaa |
14283310 |
T |
|
| Q |
111 |
gcagtgaacaaagaagcaatcacaatgtttgctgcccaataaattctaagtggtaaagggtgtgtggaagctttcaactttatctcatgtaccattagaa |
210 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14283311 |
gcagtgaacaaagaagcaatcacaaagtttgctgcccaataaattctaagtggtaaagggtgtgtggaagctttcaactttatctcatgtaccattagaa |
14283410 |
T |
|
| Q |
211 |
tcactatgactatgttggttattgcttgaaacaaccgaaaaagtgcttctatttgtttccatgaagaaaggttattggtttgagtaaaagccaagattcc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14283411 |
tcactatgactatgttggttattgcttgaaacaaccgaaaaagtgcttctatttgtttccatgaagaaaggttattggtttgagtaaaagccaagattcc |
14283510 |
T |
|
| Q |
311 |
tagaacagtgtaagttatagccaaaagggtagttaccaaaaaggctagtttg |
362 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
14283511 |
tagaacagtgtaacttatagccaaaagggtagttaacaaaaaggctagtttg |
14283562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 11 - 362
Target Start/End: Original strand, 14304969 - 14305320
Alignment:
| Q |
11 |
cacagataatggaagattaaccaaagagaatatgtcatctattctcaaattaagctccaactttgtttcaccaacggttatcattcgaacaatagctgaa |
110 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||| || ||||||| |||||||||||| ||| |
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| T |
14304969 |
cacagataatggaagattaaccaatgagaatatgtcatctattctcaaactaagctccaacttttcttcacggacagttatcaatcgaacaatagccgaa |
14305068 |
T |
|
| Q |
111 |
gcagtgaacaaagaagcaatcacaatgtttgctgcccaataaattctaagtggtaaagggtgtgtggaagctttcaactttatctcatgtaccattagaa |
210 |
Q |
| |
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||| ||||||| ||||||||||| ||||||| |||||| ||||| |||| |||||||||| |||||| ||| |||||| ||||||||| |||||||| |
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| T |
14305069 |
acagcaaacaaagtagcaatcacaaagtttgctatccaatagattcttagtgataaagggtgtttggaagatttgaactttttctcatgtaacattagaa |
14305168 |
T |
|
| Q |
211 |
tcactatgactatgttggttattgcttgaaacaaccgaaaaagtgcttctatttgtttccatgaagaaaggttattggtttgagtaaaagccaagattcc |
310 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14305169 |
tcactataactatgttggttattgcttgaaacaaccgaaaaagtgcttctatttgtttccatgaagaaaggttattggtttgagtaaaagccaagattcc |
14305268 |
T |
|
| Q |
311 |
tagaacagtgtaagttatagccaaaagggtagttaccaaaaaggctagtttg |
362 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14305269 |
tagaacagtgtaacttatagccaaaagggtagttaccaaaaaggctagtttg |
14305320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 362
Target Start/End: Original strand, 14321360 - 14321711
Alignment:
| Q |
11 |
cacagataatggaagattaaccaaagagaatatgtcatctattctcaaattaagctccaactttgtttcaccaacggttatcattcgaacaatagctgaa |
110 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||| ||||| |||||||||||||| |||||| || ||||||| |||||||||||||||| |
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| T |
14321360 |
cacagataatggaagattaaccaatgagaatatatcatctattttcaaactaagctccaacttttcttcaccgacagttatcaatcgaacaatagctgaa |
14321459 |
T |
|
| Q |
111 |
gcagtgaacaaagaagcaatcacaatgtttgctgcccaataaattctaagtggtaaagggtgtgtggaagctttcaactttatctcatgtaccattagaa |
210 |
Q |
| |
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|||| ||||||| ||||| |||| ||||||| |||||| ||||| |||| |||||||||| |||||| ||| |||||| |||||||||||||||| | |
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| T |
14321460 |
gcagcaaacaaagttgcaattacaaagtttgctatccaatagattcttagtgataaagggtgtttggaagatttgaactttttctcatgtaccattagta |
14321559 |
T |
|
| Q |
211 |
tcactatgactatgttggttattgcttgaaacaaccgaaaaagtgcttctatttgtttccatgaagaaaggttattggtttgagtaaaagccaagattcc |
310 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14321560 |
tcactatcactatgttggttattgcttgaaacaaccgaaaaagtgcttctatttgtttccatgaagaaagtttattggtttgagtaaaagccaagattcc |
14321659 |
T |
|
| Q |
311 |
tagaacagtgtaagttatagccaaaagggtagttaccaaaaaggctagtttg |
362 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14321660 |
tagaacagtgtaacttatagccaaaagggtagttaccaaaaaggctagtttg |
14321711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 14 - 354
Target Start/End: Original strand, 25886045 - 25886385
Alignment:
| Q |
14 |
agataatggaagattaaccaaagagaatatgtcatctattctcaaattaagctccaactttgtttcaccaacggttatcattcgaacaatagctgaagca |
113 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| |||| | ||| ||||| | || ||||||| | |
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|
| T |
25886045 |
agataatggaagattaaccaatgagaatatgtcatctattctcaaactaagttccaacttctcctcactggcatttacaattcggaaaacagctgaaata |
25886144 |
T |
|
| Q |
114 |
gtgaacaaagaagcaatcacaatgtttgctgcccaataaattctaagtggtaaagggtgtgtggaagctttcaactttatctcatgtaccattagaatca |
213 |
Q |
| |
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| ||||||||||||||||||| ||||||| |||||| ||||| |||| |||||||||| |||||| ||| |||||| ||||||||| ||||||||||| |
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| T |
25886145 |
gcaaacaaagaagcaatcacaaagtttgctatccaatagattcttagtgataaagggtgtttggaagatttgaactttttctcatgtaacattagaatca |
25886244 |
T |
|
| Q |
214 |
ctatgactatgttggttattgcttgaaacaaccgaaaaagtgcttctatttgtttccatgaagaaaggttattggtttgagtaaaagccaagattcctag |
313 |
Q |
| |
|
| || || |||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25886245 |
caatcacaatgttgactactgcttgaaacaaccgaaaaggtgcttctatttgtttccatgaagaaaggttattggtttgagtaaaagccaagattcctag |
25886344 |
T |
|
| Q |
314 |
aacagtgtaagttatagccaaaagggtagttaccaaaaagg |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |
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| T |
25886345 |
aacagtgtaagttatagccaaaagggtagttaccaacaagg |
25886385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 13 - 362
Target Start/End: Original strand, 44349888 - 44350237
Alignment:
| Q |
13 |
cagataatggaagattaaccaaagagaatatgtcatctattctcaaattaagctccaactttgtttcaccaacggttatcattcgaacaatagctgaagc |
112 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||| |||| |||| ||| |||| ||| ||||| | || ||||||| |
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|
| T |
44349888 |
cagataatggaagattaaccaatgagaatatatcatctattctcaaactaagttccattttttcctcactggtatttacaattcggaaaacagctgaaat |
44349987 |
T |
|
| Q |
113 |
agtgaacaaagaagcaatcacaatgtttgctgcccaataaattctaagtggtaaagggtgtgtggaagctttcaactttatctcatgtaccattagaatc |
212 |
Q |
| |
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|| ||||||||||||||||||| |||| || |||||| ||||| || | |||||||||| |||||| ||| |||||| ||| |||| |||||||||| |
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| T |
44349988 |
agcaaacaaagaagcaatcacaaagtttactatccaatagattcttagggataaagggtgtttggaagatttgaacttttcctcgtgtaacattagaatc |
44350087 |
T |
|
| Q |
213 |
actatgactatgttggttattgcttgaaacaaccgaaaaagtgcttctatttgtttccatgaagaaaggttattggtttgagtaaaagccaagattccta |
312 |
Q |
| |
|
||||| ||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
44350088 |
actattactatgttgactacagcttgaaacaaccgaaaaggtgcttctatttgtttccatgaagaaaggttattggtttgagtaaaagccaatattccta |
44350187 |
T |
|
| Q |
313 |
gaacagtgtaagttatagccaaaagggtagttaccaaaaaggctagtttg |
362 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||| |||| ||||||| |
|
|
| T |
44350188 |
gaacagtttaagttatagccaaaatggtagttaccaacaagggtagtttg |
44350237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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