View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3735_low_9 (Length: 330)
Name: NF3735_low_9
Description: NF3735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3735_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 42 - 194
Target Start/End: Original strand, 48568936 - 48569090
Alignment:
| Q |
42 |
ttctttaggtcactgcaaagagctc--gacagaagactctaccttcttctctatggagatacctatggggctccgagcgggaaacctgtgtggcattttc |
139 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48568936 |
ttctttaggtcactgcaaagagctcttgacagaagactctaccttcttctctatggagatacctatggggctccgagcgggaaacctgtgtggcattttc |
48569035 |
T |
|
| Q |
140 |
cagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattcattgtgg |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48569036 |
cagagaaaccttatgaatcagaggaaaccatgcgtaaggtgaacattcattgtgg |
48569090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 253 - 313
Target Start/End: Original strand, 48569141 - 48569201
Alignment:
| Q |
253 |
gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacct |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48569141 |
gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacct |
48569201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 44 - 187
Target Start/End: Complemental strand, 10822347 - 10822202
Alignment:
| Q |
44 |
ctttaggtcactgcaaagagctc--gacagaagactctaccttcttctctatggagatacctatggggctccgagcgggaaacctgtgtggcattttcca |
141 |
Q |
| |
|
|||||||||||| ||||| |||| ||||||||||| ||||||||||||| ||| ||| | ||||||||||| || || || |||||||||||||||||| |
|
|
| T |
10822347 |
ctttaggtcactacaaagggctcttgacagaagactttaccttcttctctttggtgatgcttatggggctccaagtggaaagcctgtgtggcattttcca |
10822248 |
T |
|
| Q |
142 |
gagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc |
187 |
Q |
| |
|
|| ||| ||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
10822247 |
gaaaaagtatatgaatcagaggaaactatgcgtaaggtgaacattc |
10822202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 43 - 187
Target Start/End: Original strand, 36145048 - 36145194
Alignment:
| Q |
43 |
tctttaggtcactgcaaagagctc--gacagaagactctaccttcttctctatggagatacctatggggctccgagcgggaaacctgtgtggcattttcc |
140 |
Q |
| |
|
||||||||||||| ||||| |||| || |||||||| ||||||||||||| ||| ||| | ||||||||||| || || || ||||||||||||||||| |
|
|
| T |
36145048 |
tctttaggtcactacaaagggctcttgatagaagactttaccttcttctctttggtgatgcttatggggctccaagtggaaagcctgtgtggcattttcc |
36145147 |
T |
|
| Q |
141 |
agagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc |
187 |
Q |
| |
|
||| ||| |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
36145148 |
agaaaaagtatatgaatcagaggataccatgcgtaaggtgaacattc |
36145194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 318
Target Start/End: Complemental strand, 10821937 - 10821878
Alignment:
| Q |
259 |
ttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctatttt |
318 |
Q |
| |
|
||||||||||| || ||||| |||||||||||| |||||||||| || ||||| |||||| |
|
|
| T |
10821937 |
ttgcagtgtgcagaatctgccttgaaatcagtcttaggagatctttcgaatacatatttt |
10821878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University