View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3736_high_1 (Length: 642)
Name: NF3736_high_1
Description: NF3736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3736_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 145 - 626
Target Start/End: Complemental strand, 8004838 - 8004362
Alignment:
| Q |
145 |
gatgtaacaattgagaaaatttaagaaaatttcacttgggagaattcatcccctccttgaaaggttgtaaataaattccaacacaagtactcataattat |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||| |
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| T |
8004838 |
gatgtaacaattgagaaaatttaagaaaatttcacttgggagaattcatcccctccttgagaggttgtaaataaattccaacataagtactcataactat |
8004739 |
T |
|
| Q |
245 |
tgattattttctcttatgtgatttctttcacgtagcaaagaacagtgaactttcccagatcttctctcgtcgtatggaagtccaacggtagaaaaactaa |
344 |
Q |
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| T |
8004738 |
tgattattttctcttatgtgatttctttcacgtagcaaagaacagtgaactttctcagaaga-----cgtcgtatggaagtccaatggtagaaaaactaa |
8004644 |
T |
|
| Q |
345 |
aaacaaaccttgaatccagactaacannnnnnnaagagaggagattttcacaccttcaatatcacttccatgtacacattcaaaaacgtgaattttgtgc |
444 |
Q |
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| T |
8004643 |
aaacaaaccttgactccagactagcatttttttaacagacgagattttcacaccttcaatatcacttccatgtacacattcaaaaacgtgaattttgtgc |
8004544 |
T |
|
| Q |
445 |
agctagaaagcaatctcaaaatacaatatttatctagtgaaaaatacacttccaaaaacatgttaattatttagaaacgagggaagtaagaactaagaaa |
544 |
Q |
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||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
8004543 |
agctaaaaagcaatctcaaaatacaaaatttatctagtgaaaaatacacttccaaaaacatgttaattatttagaaatgacggaagtaagaactaagaaa |
8004444 |
T |
|
| Q |
545 |
agttgttctttctcctaattatcatattatatcaacacatttatccatacgtgtccccttgccatatgatgacccatatcaa |
626 |
Q |
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| T |
8004443 |
agttattctttctcctaattatcatcttatatcaacacatttattcatacgtgtccccttgccatatgatgacccatatcaa |
8004362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 8004973 - 8004898
Alignment:
| Q |
9 |
agcataggtatagatctaattctcataagtggaattctccattttactcgattgttacatctcaatcacacactca |
84 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8004973 |
agcataggtatagatctaattctcataagtgaaattctccattttactcgattgttacatctcaaccacacactca |
8004898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 5908853 - 5908914
Alignment:
| Q |
25 |
taattctcataagtggaattctc--cattttactcgattgttacatctcaatcacacactca |
84 |
Q |
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| T |
5908853 |
taattctctcaagtgaaattctcttcatttttctcaattgttacatctcaatcacacactca |
5908914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 5908899 - 5908854
Alignment:
| Q |
145 |
gatgtaacaattgagaaaatttaagaaaatttcacttgggagaatt |
190 |
Q |
| |
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||||||||||||||||||| | |||| ||||||||||| ||||||| |
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| T |
5908899 |
gatgtaacaattgagaaaaatgaagagaatttcacttgagagaatt |
5908854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 30364344 - 30364388
Alignment:
| Q |
145 |
gatgtaacaattgagaaaatttaagaaaatttcacttgggagaat |
189 |
Q |
| |
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||||||||||||||||||| | ||||||||||||||| |||||| |
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| T |
30364344 |
gatgtaacaattgagaaaaatggagaaaatttcacttgagagaat |
30364388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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