View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3736_high_2 (Length: 568)
Name: NF3736_high_2
Description: NF3736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3736_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 474; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 15 - 560
Target Start/End: Complemental strand, 35524269 - 35523724
Alignment:
| Q |
15 |
actgctccagttcgttgatcaatatccaaactgtttgtgaaagccaaaggttgaccttctactgcatgtgatatgacttttctagcaatgccgccggtgg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35524269 |
actgctccagttcgttgatcaatatccaaactgtttgtgaaagccaacggttgaccttctactgcatgtgatatgacttttctagcaatgccgccggtgg |
35524170 |
T |
|
| Q |
115 |
attcaataacaactagtcccatgtatgcatcagcaacataaagttgaccagatgctacattaaagcacagcccaagcgggcgcccacatacgtgctcttt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35524169 |
gttcaataacaactagtcccatgtatgcatcagcaacataaagttgaccagatgctacattaaagcacagcccaagcgggcgcccacatatgtgctcttt |
35524070 |
T |
|
| Q |
215 |
ctttggatgctccttatatggtcctccacactcttcaacatcatcatcatcacctctgccaaatcaaccgtatcaacttttcataggataatgttttatt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35524069 |
ctttggatgctccttatatggtcctccacactcttcaacatcatcatcatcacctctgccaaatcaaccgtatcaacttttcgtaggataatgttttatt |
35523970 |
T |
|
| Q |
315 |
gactaccttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagagacnnnnnnnnctaaatttcttttgtgtgtgaactctcagccaaa |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
35523969 |
gactaccttttctccatacacacaatgtaccatcctcatgggagagtatgtgagagacaaaaaaaattaaatttcttttgtgtgtgaactctcacccaaa |
35523870 |
T |
|
| Q |
415 |
agaaggacgtattgggtgagagttcacctaagaatttctcatagatagtgtgacaaagtaagaggttgtgagtgttaacctgtgtggagaagaagtgacg |
514 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35523869 |
agaagaacgtattgggtgagagttcacctaagaatttctcatagatagtgtgacaaagaaagaggttgtgagtgttaacctgtgtggagaagaagtgacg |
35523770 |
T |
|
| Q |
515 |
gcaaagtcctcccaacggttttcacgacggtgccatttgatgatgt |
560 |
Q |
| |
|
|||||||||||||||||||||| | || |||||||||||||||||| |
|
|
| T |
35523769 |
gcaaagtcctcccaacggttttgatgatggtgccatttgatgatgt |
35523724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 35520680 - 35520416
Alignment:
| Q |
15 |
actgctccagttcgttgatcaatatccaaactgtttgtgaaagccaaaggttgaccttctactgcatgtgatatgacttttctagcaatgccgccggtgg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35520680 |
actgctccagttcgttgatcaatatccaaactgtttgtgaaagctaaaggttgaccttctactgcatgtgatatgacttttctagcaatgccgccggtgg |
35520581 |
T |
|
| Q |
115 |
attcaataacaactagtcccatgtatgcatcagcaacataaagttgaccagatgctacattaaagcacagcccaagcgggcgcccacatacgtgctcttt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||| |
|
|
| T |
35520580 |
attcaataacaactagtcccatgtatgcatcagcaacataaagttgaccagatgctacattaaagcacagcccaagcggacgcccacatatgtgttcttt |
35520481 |
T |
|
| Q |
215 |
ctttggatgctccttatatggtcctccacactcttcaacatcatcatcatcacctctgccaaatcaac |
282 |
Q |
| |
|
||| ||||||||||| |||||||||| |||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
35520480 |
cttaggatgctccttgtatggtcctcgacactcatcaacatcatc---atcacctctgccaaatcaac |
35520416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 478 - 560
Target Start/End: Complemental strand, 35518208 - 35518126
Alignment:
| Q |
478 |
ggttgtgagtgttaacctgtgtggagaagaagtgacggcaaagtcctcccaacggttttcacgacggtgccatttgatgatgt |
560 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
35518208 |
ggttgagagtgttaacctgtgtgaagaagaagtgacggcaaagtccacccaacggttctcatgacggtgccatttgatgatgt |
35518126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 35527072 - 35527011
Alignment:
| Q |
64 |
gttgaccttctactgcatgtgatatgacttttctagcaatgccgccggtggattcaataaca |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||| |
|
|
| T |
35527072 |
gttgaccttctactgcatgtgatatgacttttctagcaatgctaccagtgggttcaataaca |
35527011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 371
Target Start/End: Complemental strand, 43359155 - 43359083
Alignment:
| Q |
299 |
aggataatgttttattgactaccttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagaga |
371 |
Q |
| |
|
|||||||||||| |||||| | |||||||||||||||||||||| || ||||||| |||||||||||||||| |
|
|
| T |
43359155 |
aggataatgtttcattgacaccattttctccatacacacaatgtatcaccctcatgtgagagtgtgtgagaga |
43359083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 454
Target Start/End: Original strand, 37025637 - 37025665
Alignment:
| Q |
426 |
ttgggtgagagttcacctaagaatttctc |
454 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37025637 |
ttgggtgagagttcacctaagaatttctc |
37025665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 15066041 - 15066092
Alignment:
| Q |
321 |
cttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagagac |
372 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
15066041 |
cttttttccatacatacaatgtaccactctcatgtgagagtgtgtgagagac |
15066092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 372
Target Start/End: Original strand, 34311235 - 34311285
Alignment:
| Q |
322 |
ttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagagac |
372 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| | ||||||| ||||||||| |
|
|
| T |
34311235 |
ttttctccatacacataatgtaccaccctcacgtgagagtgcgtgagagac |
34311285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 367
Target Start/End: Original strand, 13276472 - 13276541
Alignment:
| Q |
298 |
taggataatgttttattgactaccttttctccatacacacaatgtaccatcctcatgggagagtgtgtga |
367 |
Q |
| |
|
||||||||||||| || || |||||||||||||||||| |||||||| | |||| |||||||||||| |
|
|
| T |
13276472 |
taggataatgtttcatgaacacccttttctccatacacactatgtaccactcccatgtgagagtgtgtga |
13276541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 372
Target Start/End: Complemental strand, 19989419 - 19989347
Alignment:
| Q |
299 |
aggataatgttttattgactaccttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagagac |
372 |
Q |
| |
|
|||||||||||| || ||| |||||||| ||||||||| ||||||| |||||| ||||||||||||||||| |
|
|
| T |
19989419 |
aggataatgtttcatagacactcttttctc-atacacacattgtaccactctcatgtgagagtgtgtgagagac |
19989347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 46135685 - 46135636
Alignment:
| Q |
322 |
ttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagaga |
371 |
Q |
| |
|
||||||||||||||||| ||||||| || ||| |||||||||||||||| |
|
|
| T |
46135685 |
ttttctccatacacacattgtaccacccctatgtgagagtgtgtgagaga |
46135636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 454
Target Start/End: Original strand, 23045331 - 23045359
Alignment:
| Q |
426 |
ttgggtgagagttcacctaagaatttctc |
454 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
23045331 |
ttgggtgagagttcacctaagaatttctc |
23045359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 300 - 372
Target Start/End: Original strand, 48034808 - 48034879
Alignment:
| Q |
300 |
ggataatgttttattgactaccttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagagac |
372 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||||| ||||||| | ||||| ||||||||||||||||| |
|
|
| T |
48034808 |
ggataatgttttatgtacacacttttttccatacacacattgtacca-cttcatgtgagagtgtgtgagagac |
48034879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University