View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3736_high_4 (Length: 238)
Name: NF3736_high_4
Description: NF3736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3736_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 6909743 - 6909948
Alignment:
| Q |
18 |
actaaaaatatgtttaactctttaaaattttgagtggataaattcaacatcctattctttgcatatggaggaagtgcattgaaagggataagttatgttt |
117 |
Q |
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| T |
6909743 |
actaaaaatatgtttaactctttaaaattttgagtggataaattcaacatcctattctttgcatatggaggaagtgcattgaaagggataagttatgttt |
6909842 |
T |
|
| Q |
118 |
gaattgtgagtgtgatgaaaaagttgatggttacttgcacatttttgcatttgttgttttgcaaggtaagttcaagagggaatatacacgtctttaataa |
217 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6909843 |
gaattgtgagtgggatgaaaaagttgatggttacttgcacatttttgcatttgttgttttgcaaggtaagttcaagagggaatatacacgtctttaataa |
6909942 |
T |
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| Q |
218 |
cctttg |
223 |
Q |
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|||||| |
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| T |
6909943 |
cctttg |
6909948 |
T |
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