View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3736_low_3 (Length: 446)
Name: NF3736_low_3
Description: NF3736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3736_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 137 - 436
Target Start/End: Original strand, 51551258 - 51551559
Alignment:
| Q |
137 |
atcaataactttttaatccttgtttt--ttccattctaattttagctgcttagaaaaaagagagaaggatattgaaagttattgttacattgtgaagggt |
234 |
Q |
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| T |
51551258 |
atcaataactttttaatccttgttttttttccattctaattttagctgcttagaaaaaagagagaaggatattgaaagttattgttacattgtgaagggt |
51551357 |
T |
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| Q |
235 |
atgaagattttgcggcaaataagcttgctattattaatttggaacaacatcgaccacnnnnnnnctttctttctaaaattagaatacctgaaagatctct |
334 |
Q |
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| T |
51551358 |
atgaagattttgcggcaaataagcttgctattattaatttggaacaacattgaccacttttttt-tttctttctaaaattagaacacctgaaagatctct |
51551456 |
T |
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| Q |
335 |
catccactgttactattggtttctccttgcagaaaaacaatatt-aaattgcagttgatgaaacagaattagttcataaggagttgaaattaaccctcct |
433 |
Q |
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| T |
51551457 |
catccactgttaatattggtttctccttgcagaaaaacaatattaaaattgcagttgatgaaacagaattagttcataaggagttgaaactaaccctcct |
51551556 |
T |
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| Q |
434 |
ttg |
436 |
Q |
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| T |
51551557 |
ttg |
51551559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 51551172 - 51551258
Alignment:
| Q |
18 |
aaaatgaacatacataatcctagatttgactaat----gtcatatttttaggaggaagctaagagtgaataaaaataactaagataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
51551172 |
aaaatgaacatacataatcctagatttgactaattaatgtcatatttttaggaggaagctaagagtgaattaaaataactaagataa |
51551258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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