View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3737_high_11 (Length: 222)

Name: NF3737_high_11
Description: NF3737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3737_high_11
NF3737_high_11
[»] chr1 (2 HSPs)
chr1 (127-204)||(43095457-43095534)
chr1 (11-67)||(43095341-43095397)
[»] chr3 (3 HSPs)
chr3 (22-67)||(44162638-44162683)
chr3 (22-67)||(44188758-44188803)
chr3 (11-67)||(6094904-6094960)
[»] chr2 (2 HSPs)
chr2 (22-67)||(32727886-32727931)
chr2 (22-67)||(32718902-32718947)


Alignment Details
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 43095457 - 43095534
Alignment:
Q  127 gttcagtccaatcaatacatttatatgctttgattttgttttcttaaacaaaatctgtactaaagtggccaatacatt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43095457 gttcagtccaatcaatacatttatatgctttgattttgttttcttaaacaaaatctgcactaaagtggccaatacatt 43095534  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 43095341 - 43095397
Alignment:
Q  11 agcagagacgcgaaaaggaacttgacaagttacaagctgttgtaagtatttgttcaa 67  Q
    |||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  43095341 agcagaaacgtgaaaaggaacttgacaagttacaagctgctgtaagtatttgttcaa 43095397  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 44162683 - 44162638
Alignment:
Q  22 gaaaaggaacttgacaagttacaagctgttgtaagtatttgttcaa 67  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  44162683 gaaaaggaacttgacaagttacaagctgctgtaagtatttgttcaa 44162638  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 44188803 - 44188758
Alignment:
Q  22 gaaaaggaacttgacaagttacaagctgttgtaagtatttgttcaa 67  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  44188803 gaaaaggaacttgacaagttacaagctgctgtaagtatttgttcaa 44188758  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 6094960 - 6094904
Alignment:
Q  11 agcagagacgcgaaaaggaacttgacaagttacaagctgttgtaagtatttgttcaa 67  Q
    |||||| ||| ||||| |||||||||||||||||||||| |||||||||||||||||    
T  6094960 agcagaaacgtgaaaatgaacttgacaagttacaagctgctgtaagtatttgttcaa 6094904  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 32727931 - 32727886
Alignment:
Q  22 gaaaaggaacttgacaagttacaagctgttgtaagtatttgttcaa 67  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  32727931 gaaaaggaacttgacaagttacaagctgctgtaagtatttgttcaa 32727886  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 32718947 - 32718902
Alignment:
Q  22 gaaaaggaacttgacaagttacaagctgttgtaagtatttgttcaa 67  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||    
T  32718947 gaaaaggaacttgacaagttacaagctgctgtaagtatttattcaa 32718902  T

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