View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3737_high_2 (Length: 607)
Name: NF3737_high_2
Description: NF3737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3737_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 537; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 1 - 592
Target Start/End: Complemental strand, 4175860 - 4175269
Alignment:
| Q |
1 |
aggtagacattcacattcatacgcttatgcttcttgttcttcttcttctccaaagggatgtggtcttgaaactttcttcccttggagaactatgaagcat |
100 |
Q |
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| T |
4175860 |
aggtagacattcacattcatacgcttatgcttcttgttcttcttcttctccaaagggatgtggtcttgaaactttcttcccttggagaactatgaagcat |
4175761 |
T |
|
| Q |
101 |
aagttttgtgctatagagagccctgtactgccatgctccacgactacgacaaatctgcagaaacatcagcgcaactcgagagagtcgggacagaagaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4175760 |
aagttttgtgctatagagagccctgtactgccatgctccacgactacgacaaatctgcagaaacatcagcgcaactcgagagagtcgggacagaagaaac |
4175661 |
T |
|
| Q |
201 |
aacggtcatcagcttacatcccttgcacgaatgtgaagaaagatgtttgatgaatcaagatagtttctttttctttttgatctagaccctccgtgcagtt |
300 |
Q |
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| T |
4175660 |
aacggtcatcaccttacatcccttgcacgaatgtgaagaaagatgtttgatgaatcaagatagtttctttttctttttgatctagaccctccgtgcagtt |
4175561 |
T |
|
| Q |
301 |
tgagttgagtcgggtggactcggaagatgataaagttctaccaacgctattttttcattcataagacttgaattcaaaaccttatttaaggggaaccaaa |
400 |
Q |
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| T |
4175560 |
tgagttgagtcgggtggactcggaagatgataaagttctaccaacgctattttttcattcataagacttgaattcaaaaccttatttaaggggaaccaaa |
4175461 |
T |
|
| Q |
401 |
gtcaatcttgtttgaaccaacaagcgttggttagtcgaaccagttctttgattcattcattttacctaatatatactaaatcttttttgtatgtgtaagt |
500 |
Q |
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| T |
4175460 |
gtcaatcttgtttgaaccaacaagcgttggttagtcgaactagttctttgattcattcattttacctagtatatactaaatcttttttgtatat-aaagt |
4175362 |
T |
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| Q |
501 |
attttatgctaccttcttaagcatgcatttgttgtaatatgtcaattcgtagtaattgtttggta-tgtgttcggtcattgattatcgcgtcc |
592 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||| |||||||||| | |||||||||| ||||||| ||||||||||||||||||| |
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| T |
4175361 |
attttatgctaccttcataagcatgcatttgttgtaatatgacaattcgtagcacttgtttggtattgtgttcagtcattgattatcgcgtcc |
4175269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 324 - 597
Target Start/End: Complemental strand, 4174199 - 4173926
Alignment:
| Q |
324 |
aagatgataaagttctaccaacgctattttttcattcataagacttgaattcaaaaccttatttaaggggaaccaaagtcaatcttgtttgaaccaacaa |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
4174199 |
aagatgataaagttctaccaacgctattttttcattcacaagactcgaattcaaaaccttatttaaggagaaccaaagtcaatcttatttgaaccaacaa |
4174100 |
T |
|
| Q |
424 |
gcgttggttagtcgaaccagttctttgattcattcattttacctaatatatactaaatcttttttgtatgtgtaagtattttatgctaccttcttaagca |
523 |
Q |
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| T |
4174099 |
gcgttggttagtcgaaccagttctttgattcattcattttacctaatatatactaaatcttttttgtatgtgtaagtattttatgctaccttcttaagca |
4174000 |
T |
|
| Q |
524 |
tgcatttgttgtaatatgtcaattcgtagtaattgtttggtatgtgttcggtcattgattatcgcgtccctatg |
597 |
Q |
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| T |
4173999 |
tgcatttgttgtaatatgtcaattcgtagtaattgtttggtatgtgttcggtcattgattatcgcgtccctatg |
4173926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 529 - 592
Target Start/End: Original strand, 4042843 - 4042907
Alignment:
| Q |
529 |
ttgttgtaatatgtcaattcgtagtaattgtttggt-atgtgttcggtcattgattatcgcgtcc |
592 |
Q |
| |
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|||||||||||||||| || |||| | ||||||||| ||||||| ||||||||| ||||||||| |
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| T |
4042843 |
ttgttgtaatatgtcattttgtagcacttgtttggtgttgtgttcagtcattgatcatcgcgtcc |
4042907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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