View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3737_high_4 (Length: 373)
Name: NF3737_high_4
Description: NF3737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3737_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 214 - 355
Target Start/End: Original strand, 42037331 - 42037472
Alignment:
| Q |
214 |
gtatctggtctagctgccaatacttactcaattgaacacacatacacaatcataaaagatgcggtgaccgagttcgaactcatcatacacgattaaccct |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42037331 |
gtatctggtctagctgccaatacttactcaattgaacacacatacacaatcataaaagatgtggtgaccgagttcgaactcatcatacacgattaaccct |
42037430 |
T |
|
| Q |
314 |
acttctttgtactttctttcttttcaatttgttttatactac |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42037431 |
acttctttgtactttctttcttttcaatttgttttatactac |
42037472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 42037117 - 42037277
Alignment:
| Q |
1 |
atatatcattatcttattttgaaaatgttaaggttcaatcaaaagatgaacttgaaagatttttcttattgaagaggctgaaagattatctcaatggttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42037117 |
atatatcattatcttattttgaaaatgttaaggttcaatcaaaagatgaacttgaaagatttttcttattgaagaggctgaaagattatctcaatggttg |
42037216 |
T |
|
| Q |
101 |
ttac-nnnnnnnntctaaattatctctaattgtatgatacaaaattttgaaattgctagag |
160 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42037217 |
ttacaaaaaaaaatctaaatcatctctaattgtatgatacaaaattttgaaattgctagag |
42037277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University