View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3737_high_6 (Length: 321)
Name: NF3737_high_6
Description: NF3737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3737_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 9 - 306
Target Start/End: Original strand, 43862064 - 43862361
Alignment:
| Q |
9 |
agcagagagaggaataagcttcttcaatgtgattccatattgctcactcatatcaagcgtttcaggactaacacctttaggaagctcccattcaaaagaa |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43862064 |
agcagaaagaggaataagcttcttcaatgtgattccatattgctcactcatatcaagcgtttcaggactaacacctttaggaagctcccattcaaaagaa |
43862163 |
T |
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| Q |
109 |
tgcaacaacacagccaacatcaaaataatcattctattagcaagtggaataccaggacaaattctccttccagcaccaaaaggtaaatactcaaaatctc |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43862164 |
tgcaacaacacagccaacatcaaaataatcattctattagcaagtggaataccaggacaaattctccttccggcaccaaaaggtaaatactcaaaatctc |
43862263 |
T |
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| Q |
209 |
tccctttaaaatctacattcgaattaagaaacctttctggttgaaacaacaacggatcctcccaaaactcggggtttcttcctatagaccatgcattt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43862264 |
tccctttaaaatctacattcgaattaagaaacctttctggttgaaacaacaacggatcctcccaaaactcggggtttcttcctatagaccatgcattt |
43862361 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 22986262 - 22986307
Alignment:
| Q |
160 |
ccaggacaaattctccttccagcaccaaaaggtaaatactcaaaat |
205 |
Q |
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||||||||||||||||||||||||||||| || | |||||||||| |
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| T |
22986262 |
ccaggacaaattctccttccagcaccaaatggaatgtactcaaaat |
22986307 |
T |
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