View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3737_low_11 (Length: 239)
Name: NF3737_low_11
Description: NF3737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3737_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37318781 - 37319002
Alignment:
| Q |
1 |
ctctttggaacttatggccagtgcatttttaaaaaactacttaaaatttgtactttcgaatggaatgaaatgtgcattaaagatacctgtccatcagcaa |
100 |
Q |
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| T |
37318781 |
ctctttggaacttatggccagtgcatttttaaaaaactacttaaaatttgtactttcgaatggaatgaaatgtgcattaaagatacctgtccatcagcaa |
37318880 |
T |
|
| Q |
101 |
ttataagcaagacatgatattggccaccacttttctcaacaatagtcatggccatctcaatgataggagcaaatgaggtgggtcctgtaagataaattca |
200 |
Q |
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| T |
37318881 |
ttataagcaagacatgatattggccaccacttttctcaacaatagtcatgcccatctcaatgataggagcaaatgaggtgggtcctgtaagataaattca |
37318980 |
T |
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| Q |
201 |
atgagtcatgccatgcctaatt |
222 |
Q |
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||||||||||||||| |||||| |
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| T |
37318981 |
atgagtcatgccatggctaatt |
37319002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 37408302 - 37408262
Alignment:
| Q |
10 |
acttatggccagtgcatttttaaaaaactacttaaaatttg |
50 |
Q |
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| T |
37408302 |
acttatggctagtgcatatttaaaaaactacttaaaatttg |
37408262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 66 - 188
Target Start/End: Original strand, 39202511 - 39202635
Alignment:
| Q |
66 |
tgaaatgtgcattaaaga--tacctgtccatcagcaattataagcaagacatgatattggccaccacttttctcaacaatagtcatggccatctcaatga |
163 |
Q |
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| T |
39202511 |
tgaaatatggattaaagaattacctgtccatcagcaattattagcaagacatgatattgaccagcactttgttcaacaatagtcatggccatctcaataa |
39202610 |
T |
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| Q |
164 |
taggagcaaatgaggtgggtcctgt |
188 |
Q |
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|||| || || || || |||||||| |
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| T |
39202611 |
taggggcgaacgaagtcggtcctgt |
39202635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 34393211 - 34393285
Alignment:
| Q |
112 |
acatgatattggccaccacttttctcaacaatagtcatggccatctcaatgataggagcaaatgaggtgggtcct |
186 |
Q |
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| T |
34393211 |
acatggtattggccttcactttgctcaacaatggtgattgccatctcaatgattggggcaaatgatgtaggtcct |
34393285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 7473617 - 7473547
Alignment:
| Q |
83 |
atacctgtccatcagcaattataagcaagacatgatattggccaccacttttctcaacaatagtcatggcc |
153 |
Q |
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||||||| |||||||||||||| | ||| ||||| |||||||| ||||| | ||||||||| ||||||||| |
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| T |
7473617 |
atacctggccatcagcaattatcaccaaaacatggtattggcctccactctgctcaacaattgtcatggcc |
7473547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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