View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3737_low_3 (Length: 468)
Name: NF3737_low_3
Description: NF3737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3737_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 4348619 - 4349074
Alignment:
| Q |
1 |
attaagtggtcatcatggctttagtacaagtccagaacacaaccaactgtgtttgtggcaatatccatctatgactaaagttggtggcttggatcctcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4348619 |
attaagtggtcatcatggctttagtacaagtccagaacacaaccaactgtgtttgtggcaatatccatctatgactaaagttggtggcttggatccccat |
4348718 |
T |
|
| Q |
101 |
acttctagagtcctccatctttctcaggtatgcttcaagtcataattacttaaaccagtatagtggtaaatcgagagacgattaatcatccaatgtgaat |
200 |
Q |
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| T |
4348719 |
acttctagagtcctccatctttctcaggtatgcttcaagtcataattacttaaaccagtatagtggtaaatcgagagacgattaatcatccaatgtgaat |
4348818 |
T |
|
| Q |
201 |
ttttaaagcatgtaataatgtgagtacaatcattcattggcaagagcatctaatatagtttcttgggattgttttcaacaagtgacatcaacttcaacta |
300 |
Q |
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| T |
4348819 |
ttttaaagcatgtaataatgtgagtacaatcattcattggcaagagcatctaatatagttgcttgggattgttttcaacaagtgacatcaacttcaacta |
4348918 |
T |
|
| Q |
301 |
tgttaaaacatataaacatgaatgaaaccacttaaactttaacaagggggttatttctttcaagttatacactaatgctcttatgtcttgcagagttcag |
400 |
Q |
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| T |
4348919 |
tgttaaaacatataaacatgaatgaaaccacttaaactttaacaaggggattatttctttcaagttatacactaatgctcttatgtcttgcagagttcag |
4349018 |
T |
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| Q |
401 |
atggtttaactgtggtttcatctgggggagatgagacacttcgcttttgggatatt |
456 |
Q |
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| T |
4349019 |
atggtttaactgtggtttcatctgggggagatgagacgcttcgcttttgggatatt |
4349074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 13 - 456
Target Start/End: Complemental strand, 25745414 - 25744981
Alignment:
| Q |
13 |
tcatggctttagtacaagtccagaacacaaccaactgtgtttgtggcaatatccatctatgactaaagttggtggcttggatcctcatacttctagagtc |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||| |
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| T |
25745414 |
tcatggctttagtacaagtccagaacacaaccaactgtgtttgtggcaatatccatccatgactaaagttggaggcttggaccctcatacttctagagtc |
25745315 |
T |
|
| Q |
113 |
ctccatctttctcaggtatgcttcaagtcataattacttaaaccagtatagtggtaaatcgagagacgattaatcatccaatgtgaatttttaaagcatg |
212 |
Q |
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| T |
25745314 |
ctccatctttctcaggtatgcttcaagtcatcattacttaaaccagtatagtggtaaatcgtgagacgattaatcgtccaatgtgaatttttatagcatg |
25745215 |
T |
|
| Q |
213 |
taataatgtgagtacaatcattcattggcaagagcatctaatatagtttcttgggattgttttcaacaagtgacatcaacttcaactatgttaaaacata |
312 |
Q |
| |
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||| |||| ||||||| ||||||||||||||||||||||||| ||| | ||| |||||||||| | || |||||||||| |||||||||||| |
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| T |
25745214 |
taagaatgcgagtacagtcattcattggcaagagcatctaatttagctgcttcagattgttttc--------atataaacttcaactttgttaaaacata |
25745123 |
T |
|
| Q |
313 |
taaacatgaatgaaaccacttaaactttaacaagggggttatttctttcaagttatacactaatgctcttatgtcttgcagagttcagatggtttaactg |
412 |
Q |
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||||||||||| ||||||||||||||||| ||||| | ||||||| ||||||| ||||||||||||||||||||||||||||| ||||||| ||||| | |
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| T |
25745122 |
taaacatgaatcaaaccacttaaactttatcaaggtgattatttcattcaagt--tacactaatgctcttatgtcttgcagagtccagatgggttaacag |
25745025 |
T |
|
| Q |
413 |
tggtttcatctgggggagatgagacacttcgcttttgggatatt |
456 |
Q |
| |
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|||||||| | || ||||||||||| |||||||||||||||||| |
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| T |
25745024 |
tggtttcagccggaggagatgagactcttcgcttttgggatatt |
25744981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 18928659 - 18928523
Alignment:
| Q |
13 |
tcatggctttagtacaagtccagaacacaaccaactgtgtttgtggcaatat-----------ccatctatgactaaagttggtggcttggatcctcata |
101 |
Q |
| |
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|||| |||||||||||| |||| |||| |||||||||||||||||||||||| |||||||||| ||| |||| |||||| | ||||||| |
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| T |
18928659 |
tcatagctttagtacaaatccaaaacataaccaactgtgtttgtggcaatatgccaatatccatcatctatgaccaaacttggaggcttgaaccctcata |
18928560 |
T |
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| Q |
102 |
ct---tctagagtcctccatctttctcaggtatgctt |
135 |
Q |
| |
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|| || ||||||||||||||||||||||||||||| |
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| T |
18928559 |
cttcctccagagtcctccatctttctcaggtatgctt |
18928523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 36841029 - 36840973
Alignment:
| Q |
13 |
tcatggctttagtacaagtccagaacacaaccaactgtgtttgtggcaatatccatc |
69 |
Q |
| |
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||||| ||||||||||| |||| |||| |||||||||||||||||||||||||||| |
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| T |
36841029 |
tcatgactttagtacaaatccaaaacattaccaactgtgtttgtggcaatatccatc |
36840973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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