View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3738_high_2 (Length: 408)
Name: NF3738_high_2
Description: NF3738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3738_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 10616999 - 10616608
Alignment:
| Q |
1 |
ttttaattaattggaaaccatgctgtttagtcatatgctatttttggatgtatgcctgcataggttatttgtccaacagcagagaatatattcttgcatt |
100 |
Q |
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| T |
10616999 |
ttttaattaattggaaaccatgctgtttagtcatatgctatttttggatgtatgcctgcataggttatttgtccaacagcagagaatatattcttgcatt |
10616900 |
T |
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| Q |
101 |
gttttggtattgacagcaagtttcattttagtttttgcttagnnnnnnnngtgtcaaaggtttcactttgtactagactatatttggttatatgtaataa |
200 |
Q |
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| T |
10616899 |
gttttggtattgacagcaagtttcattttagtttttgcttagttttttttgtgtcaaagatttcactttgtactagactatatttggttatatgtaataa |
10616800 |
T |
|
| Q |
201 |
tatttttacatttaagcataaccccttttggaaaatcataaatatttattagtttttataatggaacctttcaggaattatgacatataatggccttgag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10616799 |
tatttttacatttaagcataaccccttttggaaaatcataaatatttattagtttttataatggaacctttcaggaattatgacatataatggccttgag |
10616700 |
T |
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| Q |
301 |
agctgcattctaaacaatcagtcttatgaagaagaaagcagaacaagtagaggagatggaggcataaccgattcatttgatgacgatgattc |
392 |
Q |
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| T |
10616699 |
agttgcattctaaacaatcagtcttatgaagaagaaagcagaacaagtagaggagacggaggcataaccgattcatttgatgacgatgattc |
10616608 |
T |
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