View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3739_high_10 (Length: 470)
Name: NF3739_high_10
Description: NF3739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3739_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 19 - 462
Target Start/End: Complemental strand, 8768363 - 8767918
Alignment:
| Q |
19 |
aactccgctttagttgcagtcaacgccgttgccaacgatgccatctgttcaaatctcctcttgaaatcattactcggcacaaacaacaacaacttccttt |
118 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8768363 |
aactccgctttggttgcagtcaacgctgttgccaacgatgccatctgttcaaatctcctcttgaaatcattactcggcacaaacaacaacaacttccttt |
8768264 |
T |
|
| Q |
119 |
agttttcatttgtgttgatgatgatttcaagatgggattggaacaaatgacatcggtgtcaacgacgttgattgcaactaaaacagagttcagtaatgag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
8768263 |
agttttcatttgtgttgatgatgatttcaagatgggattggaacaaatggcatcggtgtcaacgacgttgattgaaactaaaacagagatcagtaatgag |
8768164 |
T |
|
| Q |
219 |
cttacttatatgtttgaaatagcaccgagggatgctaattctcctgatcttgaatgtgggggaatgcaagtcaagtcttgtcaaaagaagacactaagaa |
318 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8768163 |
cttacttatatgtttgaaatagcatcgagtgatgctaattctcctgatcttgaatgtgggggaatgcaagtcaagtcttgtcaaaagaagacactaagaa |
8768064 |
T |
|
| Q |
319 |
tttgaacttgtgcaaaaccatgatggacaaggtgtcccccctcatggtggtttttgatcatgtagaagggttcattgtagaagcagataaatccataata |
418 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
8768063 |
tttgaacttgtgcaaaaccatgatggaaaaggtgccccccctcatggtggtttttgatcttgtagaagggtttattgtagaagcagat-aatccataata |
8767965 |
T |
|
| Q |
419 |
tttcgatgat-ata--gactttttaaggaatcggaaatatgatgatg |
462 |
Q |
| |
|
| ||| ||| ||| ||| |||||||||||||| |||||||||||| |
|
|
| T |
8767964 |
tgccgaagatcataatgaccttttaaggaatcgggaatatgatgatg |
8767918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 462
Target Start/End: Complemental strand, 8763204 - 8762756
Alignment:
| Q |
19 |
aactccgctttagttgcagtcaacgccgttgccaacgatgccatctgttcaaatctcctcttgaaatcattactcggcacaaacaacaacaacttccttt |
118 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8763204 |
aactccgctttggttgcagtcaacgctgttgccaacgatgccatctgttcaaatctcctcttgaaatcattactcggcacaaacaacaacaacttccttt |
8763105 |
T |
|
| Q |
119 |
agttttcatttgtgttgatgatgatttcaagatgggattggaacaaatgacatcggtgtcaacgacgttgattgcaactaaaacagagttcagtaatgag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
8763104 |
agttttcatttgtgttgatgatgatttcaagatgggattggaacaaatggcatcggtgtcaacgacgttgattgaaactaaaacagagatcagtaatgag |
8763005 |
T |
|
| Q |
219 |
cttacttatatgtttgaaatagcaccgagggatgctaattctcctgatcttgaatgtgggggaatgcaagtcaagtcttgtcaaaagaagacactaagaa |
318 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8763004 |
cttacttatatgtttgaaatagcatcgagtgatgctaattctcctgatcttgaatgtgggggaatgcaagtcaagtcttgtcaaaggaagacactaagaa |
8762905 |
T |
|
| Q |
319 |
tttgaacttgtgcaaaaccatgatggacaaggtgtcc--cccctcatggtggtttttgatcatgtagaagggttcattgtagaagcagataaatccataa |
416 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8762904 |
tttgaagttgtgcaaaaccatgatggaaaaggtgtcccccccctcatggtggtttttgatcttgtagaagggtttattgtagaagcagataaatccataa |
8762805 |
T |
|
| Q |
417 |
tatttcgatgat-ata--gactttttaaggaatcggaaatatgatgatg |
462 |
Q |
| |
|
||| |||| ||| ||| || ||||||||||||||| |||||||||||| |
|
|
| T |
8762804 |
tatgtcgaagatcataatgattttttaaggaatcgggaatatgatgatg |
8762756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 139 - 313
Target Start/End: Original strand, 8763135 - 8763304
Alignment:
| Q |
139 |
atgatttcaagatgggattggaacaaatgacatcggtgtcaacgacgttgattgcaactaaaacagagttcagtaatgagcttacttatatgtttgaaat |
238 |
Q |
| |
|
|||||||||||| | |||| ||||| ||| ||||| || |||| |||||| |||||| ||| | ||||||||||| |||||||| | ||||| || ||| |
|
|
| T |
8763135 |
atgatttcaagaggagatttgaacagatggcatcgttggcaacagcgttgactgcaaccaaagcggagttcagtaacgagcttacgtctatgtctggaat |
8763234 |
T |
|
| Q |
239 |
agcaccgagggatgctaattctcctgatcttgaatgtgggggaatgcaagtcaagtcttgtcaaaagaagacact |
313 |
Q |
| |
|
|||||||||||||||||||| ||||| | ||||| || ||||||| |||||| ||| |||||||||||||| |
|
|
| T |
8763235 |
agcaccgagggatgctaattatcctgctattgaacgtcggggaat-----tcaagtgttgacaaaagaagacact |
8763304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 139 - 313
Target Start/End: Original strand, 8768294 - 8768463
Alignment:
| Q |
139 |
atgatttcaagatgggattggaacaaatgacatcggtgtcaacgacgttgattgcaactaaaacagagttcagtaatgagcttacttatatgtttgaaat |
238 |
Q |
| |
|
|||||||||||| | |||| ||||| ||| ||||| || |||| |||||| |||||| ||| | ||||||||||| |||||||| | ||||| || ||| |
|
|
| T |
8768294 |
atgatttcaagaggagatttgaacagatggcatcgttggcaacagcgttgactgcaaccaaagcggagttcagtaacgagcttacgtctatgtctggaat |
8768393 |
T |
|
| Q |
239 |
agcaccgagggatgctaattctcctgatcttgaatgtgggggaatgcaagtcaagtcttgtcaaaagaagacact |
313 |
Q |
| |
|
|||||||||||||||||||| ||||| | ||||| || ||||||| |||||| ||| |||||||||||||| |
|
|
| T |
8768394 |
agcaccgagggatgctaattatcctgctattgaacgtcggggaat-----tcaagtgttgacaaaagaagacact |
8768463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 195 - 286
Target Start/End: Original strand, 489530 - 489621
Alignment:
| Q |
195 |
actaaaacagagttcagtaatgagcttacttatatgtttgaaatagcaccgagggatgctaattctcctgatcttgaatgtgggggaatgca |
286 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| || ||| || || ||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
489530 |
actaaaacagagttcagtaatgagcttacgtatatgcctggaatggcgccaagggatgctaattctcctgttcttgaacgtgggggaatgca |
489621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 493440 - 493341
Alignment:
| Q |
19 |
aactccgctttagttgcagtcaacgccgttgccaacgatgccatctgttcaaatctcctcttgaaatcattactcggcacaaacaacaacaacttccttt |
118 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||| || |||||||| || |||| |||||||| |
|
|
| T |
493440 |
aactccgttttagttgcagtcaacgctgttgccaacgaagccatctgttctaatctcctctttgaatcatcacccggcacaatcagaaacagcttccttt |
493341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 184 - 286
Target Start/End: Original strand, 493416 - 493518
Alignment:
| Q |
184 |
cgttgattgcaactaaaacagagttcagtaatgagcttacttatatgtttgaaatagcaccgagggatgctaattctcctgatcttgaatgtgggggaat |
283 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| ||||||||||||| || || |||| |||||||||||||||||| ||||||| |||| ||||| |
|
|
| T |
493416 |
cgttgactgcaactaaaacggagttcagtaacgagcttacttatacagctgggatggcactaggggatgctaattctcctgctcttgaacgtggaggaat |
493515 |
T |
|
| Q |
284 |
gca |
286 |
Q |
| |
|
||| |
|
|
| T |
493516 |
gca |
493518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 289
Target Start/End: Original strand, 492571 - 492672
Alignment:
| Q |
184 |
cgttgattgcaactaaaacagagttcagtaatgagcttacttatatgtttgaaatagcaccgagggatgctaattctcctgatcttgaatgtgggggaat |
283 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||| |||||||| |||||| ||||| ||||| ||||||||||||| ||||||| ||| ||||| |
|
|
| T |
492571 |
cgttgactgcaactaaaactgagttcagtaatga----acttatatacctgaaatggcaccaagggaagctaattctcctgctcttgaacatggaggaat |
492666 |
T |
|
| Q |
284 |
gcaagt |
289 |
Q |
| |
|
||||| |
|
|
| T |
492667 |
acaagt |
492672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 489535 - 489444
Alignment:
| Q |
27 |
tttagttgcagtcaacgccgttgccaacgatgccatctgttcaaatctcctcttgaaatcattactcggcacaaacaacaacaacttccttt |
118 |
Q |
| |
|
|||||| || |||||||| || |||||||| ||||||||||| ||||||||||| ||||||| | | |||||||| ||||||||| |||| |
|
|
| T |
489535 |
tttagtagctgtcaacgcggtcgccaacgacgccatctgttctaatctcctcttcaaatcatcatttggcacaaatgccaacaactttcttt |
489444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 501031 - 500949
Alignment:
| Q |
19 |
aactccgctttagttgcagtcaacgccgttgccaacgatgccatctgttcaaatctcctcttgaaatcattactcggcacaaa |
101 |
Q |
| |
|
||||||||||| ||||||| |||||| | ||||||| ||||||||||| ||||||||| | ||||| |||||||||||| |
|
|
| T |
501031 |
aactccgctttggttgcagccaacgcattcaccaacgaagccatctgttctaatctcctcatagaatcagcactcggcacaaa |
500949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University