View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3739_high_11 (Length: 466)
Name: NF3739_high_11
Description: NF3739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3739_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 20 - 455
Target Start/End: Complemental strand, 42342053 - 42341619
Alignment:
| Q |
20 |
accttcaatagcatataaatataatgttgtattatcttgatcatatatacataagaatttcaaataattcatacatttgtggatacataattttagattt |
119 |
Q |
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| T |
42342053 |
accttcaatagcatataaatataatgctgtattatcttgatcatatatacataagaatttcaaataattcatacatttgtggatacataattttagatt- |
42341955 |
T |
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| Q |
120 |
aagtataatatgattggttaaaatttcaggaacctgttttctggctctagatcttgctgctgactctctattcttgatcatcctcctctgccttctctcc |
219 |
Q |
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| T |
42341954 |
aagtataatatgattggttaaaatttcaggaacctgttttctggctctagatcttgctgctgactctctattcttgatcatcctcctctgccttctctcc |
42341855 |
T |
|
| Q |
220 |
accaccctttcaacaggaccatcaaccatcctctttcttcctcgtaaaccattcatatcaatcccaaattgaccacccgagttttcatttccaatcccat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42341854 |
accaccctttcaacaggaccatcaaccatcctctttcttcctcgtaaaccattcatatcaatcccaaattgaccacccgagttttcgtttccaatcccat |
42341755 |
T |
|
| Q |
320 |
ccgatgaaaccggactaacaggtccacccattcccatagtttgtgccactgccatgccataaccgcccgctgctccattcaccactctccctccgtaaca |
419 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42341754 |
ccgatgaaaccggactaacaggtccgcccattcccatagtttgtgccactgccacgccataaccgcccgctgctccattcaccactctccctccgtaaca |
42341655 |
T |
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| Q |
420 |
aacagctggcggcggtggaggataccccgtacctat |
455 |
Q |
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|| |||||||||||| |||||||||||||||||||| |
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| T |
42341654 |
aatagctggcggcggcggaggataccccgtacctat |
42341619 |
T |
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