View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3739_high_18 (Length: 331)

Name: NF3739_high_18
Description: NF3739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3739_high_18
NF3739_high_18
[»] chr6 (14 HSPs)
chr6 (1-314)||(33414549-33414862)
chr6 (40-315)||(33258215-33258491)
chr6 (43-240)||(31564920-31565117)
chr6 (1-208)||(33269522-33269733)
chr6 (129-294)||(33293083-33293248)
chr6 (2-292)||(33395034-33395326)
chr6 (70-294)||(33278972-33279191)
chr6 (1-145)||(33384006-33384154)
chr6 (194-286)||(28872999-28873091)
chr6 (59-199)||(33406911-33407051)
chr6 (73-199)||(33280358-33280484)
chr6 (1-77)||(33293002-33293078)
chr6 (94-198)||(33395858-33395962)
chr6 (252-293)||(33384166-33384207)
[»] chr2 (3 HSPs)
chr2 (19-294)||(17447706-17447982)
chr2 (1-48)||(17445607-17445654)
chr2 (91-262)||(17445431-17445606)
[»] scaffold0428 (3 HSPs)
scaffold0428 (40-315)||(2336-2612)
scaffold0428 (70-294)||(15062-15281)
scaffold0428 (73-199)||(13769-13895)


Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 33414549 - 33414862
Alignment:
Q  1 tcttcaatagatacaaactgaacatgtggacaagcaaaaacttgcattgctagatcatcaaccaactccttgaatttctcacttcttccgacaaagtcgg 100  Q
    ||||||||||||||||||||||| ||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||| |    
T  33414549 tcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaactccttgaatttctcacttctgccaacaaagtccg 33414648  T
Q  101 tttcacagttcacttcaattagaacactgatgcgcgaatcgtgaaagtatgtaccaattcttccttcagctgctagtcttccggatttcttatcagcaga 200  Q
    |||||||||||||||||||||||||||  || || | |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  33414649 tttcacagttcacttcaattagaacaccaatacgtgcatcgtgaatgtatgtaccgattcttccttcagctgctagtcttccggatttcttatcagcgga 33414748  T
Q  201 taagagacacctttttctgaggtatgcttgcgccttttcaagatcaccttctttttcagcaagagatttcttacagtccatcatccctgcaccgattttt 300  Q
    | |||||| | |||| ||||| ||||||||||||||||||||||| |||||  |||||||||||| |||||||||||||||||||||||||||  ||| |    
T  33414749 tgagagaccctttttcctgagatatgcttgcgccttttcaagatcgccttccgtttcagcaagagctttcttacagtccatcatccctgcaccagtttct 33414848  T
Q  301 tcccatagttgctt 314  Q
    || | |||||||||    
T  33414849 tctcgtagttgctt 33414862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 40 - 315
Target Start/End: Original strand, 33258215 - 33258491
Alignment:
Q  40 acttgcattgctagatcatcaaccaactccttgaatttctcacttcttccgacaaagtcggtttcacagttcacttcaattagaacactgatgcgcgaat 139  Q
    ||||||||||| ||||| |||||||||||||| |||||||||||||| || |||||||||||||||| ||||||||||||||||||||  ||| | ||||    
T  33258215 acttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaat 33258314  T
Q  140 cgtgaaag-tatgtaccaattcttccttcagctgctagtcttccggatttcttatcagcagataagagacacctttttctgaggtatgcttgcgcctttt 238  Q
    || ||  | |||||||| |||||||||||  |||||||||| ||||||||||||||||| ||| |||||| | ||||  |||| |||||||||| |||||    
T  33258315 cgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggctttt 33258414  T
Q  239 caagatcaccttctttttcagcaagagatttcttacagtccatcatccctgcaccgattttttcccatagttgctta 315  Q
    |||||||||||||| |||| ||| ||| |||||||||||||||||||||||||||| ||| ||| |  |||||||||    
T  33258415 caagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcaccggtttcttctcgcagttgctta 33258491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 43 - 240
Target Start/End: Complemental strand, 31565117 - 31564920
Alignment:
Q  43 tgcattgctagatcatcaaccaactccttgaatttctcacttcttccgacaaagtcggtttcacagttcacttcaattagaacactgatgcgcgaatcgt 142  Q
    |||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||| |||||||| |||||||||||||||||||| ||||| |||||||    
T  31565117 tgcattgcaagatcatgaaccaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgcgtgaatcgt 31565018  T
Q  143 gaaagtatgtaccaattcttccttcagctgctagtcttccggatttcttatcagcagataagagacacctttttctgaggtatgcttgcgccttttca 240  Q
    ||| ||||||||| ||||||||||||||  || |||||||||||||||| ||||| ||| |||||| | |||||||||||||||||||||||||||||    
T  31565017 gaatgtatgtaccgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttca 31564920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 33269522 - 33269733
Alignment:
Q  1 tcttcaatagatacaaactgaacatgtggacaagcaaaaacttgcattgctagatcatcaaccaactccttgaatttctcacttcttccgacaaagtcgg 100  Q
    ||||||||||||||||||||||| ||||||||||||  |||||||||||| |||||||||||||||| |||||||||||||||||| || ||||||||||    
T  33269522 tcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaacttcttgaatttctcacttctgccaacaaagtcgg 33269621  T
Q  101 tttcacagttcacttcaattagaacactgatgcgcgaatcgtgaaag----tatgtaccaattcttccttcagctgctagtcttccggatttcttatcag 196  Q
    ||||||||||||||||||||||||||| |||||  | || ||||| |    |||||||| |||||| ||||||||||||||||| | || ||||||||||    
T  33269622 tttcacagttcacttcaattagaacaccgatgcatgcattgtgaatgtatatatgtaccgattctttcttcagctgctagtcttgcagacttcttatcag 33269721  T
Q  197 cagataagagac 208  Q
    | ||| ||||||    
T  33269722 cggatgagagac 33269733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 129 - 294
Target Start/End: Original strand, 33293083 - 33293248
Alignment:
Q  129 gatgcgcgaatcgtgaaagtatgtaccaattcttccttcagctgctagtcttccggatttcttatcagcagataagagacacctttttctgaggtatgct 228  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||  || |||||| | |||||||||||||||||    
T  33293083 gatgcacgaatcgtgaatgtatgtaccaattcttccttcagctgctagtcttctggatttcttatcagcgaatgagagacccttttttctgaggtatgct 33293182  T
Q  229 tgcgccttttcaagatcaccttctttttcagcaagagatttcttacagtccatcatccctgcaccg 294  Q
    | | |||||||||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||    
T  33293183 ttcaccttttcaagatcaccttctgtttcagcatgagctttcttacagtccatcatcccagcaccg 33293248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 2 - 292
Target Start/End: Original strand, 33395034 - 33395326
Alignment:
Q  2 cttcaatagatacaaactgaacatgtggacaagcaaaaacttgcattgctagatcatcaaccaactccttgaatttctcacttctt--ccgacaaagtcg 99  Q
    |||||||||||||||||||||| ||||||||||||     ||||||||  |||||| ||||||||||||||||| | ||||||||   || |||||||||    
T  33395034 cttcaatagatacaaactgaacctgtggacaagcagcctattgcattgaaagatcagcaaccaactccttgaatctatcacttctgtgccaacaaagtcg 33395133  T
Q  100 gtttcacagttcacttcaattagaacactgatgcgcgaatcgtgaaagtatgtaccaattcttccttcagctgctagtcttccggatttcttatcagcag 199  Q
    |||||||||||||||||||| ||||||  |||||| | ||||| || |||| |||| |||||||||||||||||||| || ||||||||||| ||||| |    
T  33395134 gtttcacagttcacttcaatcagaacatagatgcgtgcatcgtcaatgtatttaccgattcttccttcagctgctagcctaccggatttcttgtcagctg 33395233  T
Q  200 ataagagacacctttttctgaggtatgcttgcgccttttcaagatcaccttctttttcagcaagagatttcttacagtccatcatccctgcac 292  Q
    || |||||| | || |||| ||||||| ||| |||||||||||||||||||   |||| || |  | ||||||||||||||| ||||| ||||    
T  33395234 atgagagaccctttgttctaaggtatgattgggccttttcaagatcacctttagtttcggctaaggctttcttacagtccataatcccagcac 33395326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 70 - 294
Target Start/End: Original strand, 33278972 - 33279191
Alignment:
Q  70 ttgaatttctcacttcttccgacaaagtcggtttcacagttcacttcaattagaacactgatgcgcgaatcgtgaaagtatgtaccaattcttccttcag 169  Q
    |||||||||| |||||| ||  ||||||||||||||||||| ||||||||||||||||||||| | |||||||||| |||||||||||||||||||| ||    
T  33278972 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctttag 33279071  T
Q  170 ctgctagtcttccggatttcttatcagcagataagagacacctttttctgaggtatgcttgcgccttttcaagatcaccttctttttcagcaagagattt 269  Q
        |||  | ||||||||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||| ||| ||||||  |||| ||||| |  ||    
T  33279072 ----tagcttgccggatttcttgtcagctgataagagac-cctttttctaaggtatgcttgcgccttttcatgataaccttcagtttcggcaagggcatt 33279166  T
Q  270 cttacagtccatcatccctgcaccg 294  Q
     |||||||||||| |||| ||||||    
T  33279167 attacagtccatcgtcccagcaccg 33279191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 33384006 - 33384154
Alignment:
Q  1 tcttcaatagatacaaactgaacatgtggacaagcaaaaa----cttgcattgctagatcatcaaccaactccttgaatttctcacttcttccgacaaag 96  Q
    ||||||| ||||||||||||||| | |||||||||||  |    |||||||||| |||||||||||||||||||| | |||||||||||| |||||||||    
T  33384006 tcttcaacagatacaaactgaacctctggacaagcaagcagccacttgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaag 33384105  T
Q  97 tcggtttcacagttcacttcaattagaacactgatgcgcgaatcgtgaa 145  Q
    ||||||| ||||||||||||||||||||||| |||| | |||| |||||    
T  33384106 tcggtttgacagttcacttcaattagaacaccgatgtgtgaatagtgaa 33384154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 194 - 286
Target Start/End: Complemental strand, 28873091 - 28872999
Alignment:
Q  194 cagcagataagagacacctttttctgaggtatgcttgcgccttttcaagatcaccttctttttcagcaagagatttcttacagtccatcatcc 286  Q
    |||||||| |||||| | ||| |||||||||||||| |||||||||||||||||||||| |||| ||||| | ||||||||||||||||||||    
T  28873091 cagcagatgagagacccttttatctgaggtatgcttacgccttttcaagatcaccttctgtttcggcaagggctttcttacagtccatcatcc 28872999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 59 - 199
Target Start/End: Original strand, 33406911 - 33407051
Alignment:
Q  59 caaccaactccttgaatttctcacttcttccgacaaagtcggtttcacagttcacttcaattagaacactgatgcgcgaatcgtgaaagtatgtaccaat 158  Q
    |||||||||||| ||||| ||||||||| || ||||||||||||||| |||||||| |||||| |||||| ||||   ||| || ||  ||||||||  |    
T  33406911 caaccaactcctcgaattgctcacttctgccaacaaagtcggtttcatagttcactacaattataacactaatgcataaattgtcaatatatgtaccggt 33407010  T
Q  159 tcttccttcagctgctagtcttccggatttcttatcagcag 199  Q
    | |||| || ||||||||||||| |||||||||||||||||    
T  33407011 ttttccatcggctgctagtcttctggatttcttatcagcag 33407051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 73 - 199
Target Start/End: Original strand, 33280358 - 33280484
Alignment:
Q  73 aatttctcacttcttccgacaaagtcggtttcacagttcacttcaattagaacactgatgcgcgaatcgtgaaagtatgtaccaattcttccttcagctg 172  Q
    |||||||||||||| || | |||||| || |||||||| ||||||| ||||| ||  ||||| |||||||||| ||| ||||  |||| ||||||||||     
T  33280358 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 33280457  T
Q  173 ctagtcttccggatttcttatcagcag 199  Q
     || ||||||||||||||| |||||||    
T  33280458 ttaatcttccggatttcttgtcagcag 33280484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 33293002 - 33293078
Alignment:
Q  1 tcttcaatagatacaaactgaacatgtggacaagcaaaaacttgcattgctagatcatcaaccaactccttgaattt 77  Q
    ||||||||||||||||||||||| ||  ||  ||||  |||||||||||| ||||||| ||||||||||||||||||    
T  33293002 tcttcaatagatacaaactgaacctgaagaatagcagcaacttgcattgcaagatcattaaccaactccttgaattt 33293078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 198
Target Start/End: Original strand, 33395858 - 33395962
Alignment:
Q  94 aagtcggtttcacagttcacttcaattagaacactgatgcgcgaatcgtgaaagtatgtaccaattcttccttcagctgctagtcttccggatttcttat 193  Q
    |||||||||||| |||||| ||||| ||||||||| ||||  |||| |||||  ||||||||  || ||||||| |||| ||||||||  ||||||||||    
T  33395858 aagtcggtttcatagttcaattcaactagaacactaatgcatgaattgtgaatttatgtaccggtttttccttcggctgttagtcttctcgatttcttat 33395957  T
Q  194 cagca 198  Q
    |||||    
T  33395958 cagca 33395962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 293
Target Start/End: Original strand, 33384166 - 33384207
Alignment:
Q  252 tttttcagcaagagatttcttacagtccatcatccctgcacc 293  Q
    |||||||||||||  ||||||||||||||||||| |||||||    
T  33384166 tttttcagcaagaactttcttacagtccatcatctctgcacc 33384207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 153; Significance: 5e-81; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 17447982 - 17447706
Alignment:
Q  19 tgaacatgtggacaagcaaaaacttgcattgctagatcatcaaccaactccttgaatttctcacttcttccgacaaagtcggtttcacagttcacttcaa 118  Q
    ||||| |||||| |||||   ||||||||||| |||||||||||||||||||||||| |||| ||||| || ||||||||||||||| |||||| |||||    
T  17447982 tgaacctgtggaaaagcagccacttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaa 17447883  T
Q  119 ttagaacactgatgcgcgaatcgtgaaagtatgtaccaattcttccttcagctgctagtcttccggatttcttatcagcagataagagacacc-tttttc 217  Q
    ||||| ||| |||||| | |||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| |||||| || ||||||    
T  17447882 ttagaccaccgatgcgtgcatcgtgaatgtatgtaccgattcttccttcagctgccagtcttccggatttcttatcagcggatgagagaccccttttttc 17447783  T
Q  218 tgaggtatgcttgcgccttttcaagatcaccttctttttcagcaagagatttcttacagtccatcatccctgcaccg 294  Q
    ||||||||||||||||||||||||||||||||||  |||| ||||| | ||||||||||||||| ||||| ||||||    
T  17447782 tgaggtatgcttgcgccttttcaagatcaccttcagtttcggcaagggctttcttacagtccataatcccagcaccg 17447706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 17445654 - 17445607
Alignment:
Q  1 tcttcaatagatacaaactgaacatgtggacaagcaaaaacttgcatt 48  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||    
T  17445654 tcttcaatagatacaaactgaacatgtggacaagcatcaacttgcatt 17445607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 91 - 262
Target Start/End: Complemental strand, 17445606 - 17445431
Alignment:
Q  91 acaaagtcggtttcacagttcacttcaattagaacactgatgcgcgaatcgtgaaagtatgtaccaattcttccttcagctgctagtcttccggatttct 190  Q
    ||||||| ||||||||||||| ||||||||||||||| | |||  || || |||| | ||||||| ||| ||| ||||| |||||| || |||||||| |    
T  17445606 acaaagttggtttcacagttcccttcaattagaacaccgttgcatgagtcatgaatgaatgtaccgatttttctttcagttgctagcctgccggatttat 17445507  T
Q  191 tatcagcagataagagacacctttttctgagg----tatgcttgcgccttttcaagatcaccttctttttcagcaa 262  Q
    |  |||| ||| |||||    |||| || |||    |||||||| ||||||||||||||||||||  |||||||||    
T  17445506 tgccagctgatgagagagcttttttactaaggtatatatgcttgagccttttcaagatcaccttcagtttcagcaa 17445431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 40 - 315
Target Start/End: Original strand, 2336 - 2612
Alignment:
Q  40 acttgcattgctagatcatcaaccaactccttgaatttctcacttcttccgacaaagtcggtttcacagttcacttcaattagaacactgatgcgcgaat 139  Q
    ||||||||||| ||||| |||||||||||||| |||||||||||||| || |||||||||||||||| ||||||||||||||||||||  ||| | ||||    
T  2336 acttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaat 2435  T
Q  140 cgtgaaag-tatgtaccaattcttccttcagctgctagtcttccggatttcttatcagcagataagagacacctttttctgaggtatgcttgcgcctttt 238  Q
    || ||  | |||||||| |||||||||||  |||||||||| ||||||||||||||||| ||| |||||| | ||||  |||| |||||||||| |||||    
T  2436 cgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggctttt 2535  T
Q  239 caagatcaccttctttttcagcaagagatttcttacagtccatcatccctgcaccgattttttcccatagttgctta 315  Q
    |||||||||||||| |||| ||| ||| |||||||||||||||||||||||||||| ||| ||| |  |||||||||    
T  2536 caagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcaccggtttcttctcgcagttgctta 2612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 70 - 294
Target Start/End: Complemental strand, 15281 - 15062
Alignment:
Q  70 ttgaatttctcacttcttccgacaaagtcggtttcacagttcacttcaattagaacactgatgcgcgaatcgtgaaagtatgtaccaattcttccttcag 169  Q
    |||||||||| |||||| ||  ||||||||||||||||||| ||||||||||||||||||||| | |||||||||| |||||||||||||||||||| ||    
T  15281 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctttag 15182  T
Q  170 ctgctagtcttccggatttcttatcagcagataagagacacctttttctgaggtatgcttgcgccttttcaagatcaccttctttttcagcaagagattt 269  Q
        |||  | ||||||||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||| ||| ||||||  |||| ||||| |  ||    
T  15181 ----tagcttgccggatttcttgtcagctgataagagac-cctttttctaaggtatgcttgcgccttttcatgataaccttcagtttcggcaagggcatt 15087  T
Q  270 cttacagtccatcatccctgcaccg 294  Q
     |||||||||||| |||| ||||||    
T  15086 attacagtccatcgtcccagcaccg 15062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 73 - 199
Target Start/End: Complemental strand, 13895 - 13769
Alignment:
Q  73 aatttctcacttcttccgacaaagtcggtttcacagttcacttcaattagaacactgatgcgcgaatcgtgaaagtatgtaccaattcttccttcagctg 172  Q
    |||||||||||||| || | |||||| || |||||||| ||||||| ||||| ||  ||||| |||||||||| ||| ||||  |||| ||||||||||     
T  13895 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 13796  T
Q  173 ctagtcttccggatttcttatcagcag 199  Q
     || ||||||||||||||| |||||||    
T  13795 ttaatcttccggatttcttgtcagcag 13769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University