View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3739_high_21 (Length: 293)
Name: NF3739_high_21
Description: NF3739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3739_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 54 - 190
Target Start/End: Complemental strand, 6567475 - 6567339
Alignment:
| Q |
54 |
gttagggaaaagaaaatttgcaaatcataaaagtcacatgtggaagagaataaataccataagaaccattattgactcctgagagttatcaagaagcaag |
153 |
Q |
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| T |
6567475 |
gttagggaaaagaaaatttgcaaatcataaaagtcacttgcggaagcgaataagtaccataagatccattattgactcctgagagttatcaagaagcaag |
6567376 |
T |
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| Q |
154 |
aacgcaaccatccagttactggctaatgcttctctaa |
190 |
Q |
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| T |
6567375 |
aacgcaaccatccggttactggctaatgcttctctaa |
6567339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 188 - 293
Target Start/End: Complemental strand, 6567252 - 6567147
Alignment:
| Q |
188 |
taatcacataccttctcatgaaaacgaccgtctgcaattattaaaacaagttgctgtagggggttatggccagatggaagtcgtgcttttacaacagcag |
287 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6567252 |
taatcacataccttttcatgaaaacgaccgtctgcaattattaaaacaagttgctgtagggggttatggccagatggaagtcgtgcttttacaacagcag |
6567153 |
T |
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| Q |
288 |
catcta |
293 |
Q |
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|||||| |
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| T |
6567152 |
catcta |
6567147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 188 - 283
Target Start/End: Complemental strand, 6652692 - 6652597
Alignment:
| Q |
188 |
taatcacataccttctcatgaaaacgaccgtctgcaattattaaaacaagttgctgtagggggttatggccagatggaagtcgtgcttttacaaca |
283 |
Q |
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| T |
6652692 |
taatcacataccttttcatgaaaacgaccgtctgcaattattaaaacaagttgctgtagggggttatggccagatggaagtcgtgcttttacaaca |
6652597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 188 - 283
Target Start/End: Complemental strand, 6733092 - 6732997
Alignment:
| Q |
188 |
taatcacataccttctcatgaaaacgaccgtctgcaattattaaaacaagttgctgtagggggttatggccagatggaagtcgtgcttttacaaca |
283 |
Q |
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| T |
6733092 |
taatcacataccttttcatgaaaatgaccgtctgcaatcattaaaacaagttgctgtagggggttatggccagatggaagtcgtgcttttacaaca |
6732997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 106 - 190
Target Start/End: Complemental strand, 6652863 - 6652779
Alignment:
| Q |
106 |
aataccataagaaccattattgactcctgagagttatcaagaagcaagaacgcaaccatccagttactggctaatgcttctctaa |
190 |
Q |
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| T |
6652863 |
aataccataagaaccattattgactcctgagagttatcaagaagcaagaacgcaaccatccggttactggctaatgcttctctaa |
6652779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 106 - 190
Target Start/End: Complemental strand, 6733263 - 6733179
Alignment:
| Q |
106 |
aataccataagaaccattattgactcctgagagttatcaagaagcaagaacgcaaccatccagttactggctaatgcttctctaa |
190 |
Q |
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| T |
6733263 |
aataccataagaaccattattgactcctgagagttatcaagaagcaagaacgcaaccatccggttactggctaatgcttctctaa |
6733179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 6567803 - 6567749
Alignment:
| Q |
1 |
tcttgaaatcaaaaatggattttgcatgtcttcaatgagtctttaaccaatcagt |
55 |
Q |
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| T |
6567803 |
tcttgaaatcaaaaatggattttgcacgtcttcaatgagtctttaaccagtcagt |
6567749 |
T |
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