View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3739_high_25 (Length: 250)
Name: NF3739_high_25
Description: NF3739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3739_high_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 50393521 - 50393295
Alignment:
| Q |
7 |
tcgaagaatatcaaaagaaatagcagcaggaagccaacctataaacaaaatcaaagcctttgtgtcatcatagtaaatagcagagtaaagctgtgtgatt |
106 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50393521 |
tcgaagaaaagcaaaagaaatagcagcaggaagccaacctataaacaaaatcaaagcctttgtgtcatcatagtaaatagcagagtaaagctgtgtgatt |
50393422 |
T |
|
| Q |
107 |
attgcaccactaagaccaacatagcctttaagaattcccaaaaccgcgccacgagattcagggaaattcttaacacaagtcacaagtgaaccagtgtttg |
206 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50393421 |
attgcaccactaagaccaacataacctttaagaattcccaaaaccgctccgcgagattcagggaaattcttaacacaagtcacaagtgaaccagtgtttg |
50393322 |
T |
|
| Q |
207 |
caaaagactgagaattagcacctatac |
233 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
50393321 |
caaaagactgagaattagcacctatac |
50393295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 50385102 - 50384876
Alignment:
| Q |
7 |
tcgaagaatatcaaaagaaatagcagcaggaagccaacctataaacaaaatcaaagcctttgtgtcatcatagtaaatagcagagtaaagctgtgtgatt |
106 |
Q |
| |
|
|||||||| | |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
50385102 |
tcgaagaaaagcaaacgaaatagcagcaggaagccaaccaataaacaaaatcaaagcctttgtgtcatcataataaatagcagagtaaagctgtgtgatg |
50385003 |
T |
|
| Q |
107 |
attgcaccactaagaccaacatagcctttaagaattcccaaaaccgcgccacgagattcagggaaattcttaacacaagtcacaagtgaaccagtgtttg |
206 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50385002 |
attgcaccactgagaccaacatagcctttaagaattcccaaaaccgcgccgcgagattcagggaaattcttaacacaagtcacaagtgaaccagtgtttg |
50384903 |
T |
|
| Q |
207 |
caaaagactgagaattagcacctatac |
233 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
50384902 |
caaaagactgagaattagcacctatac |
50384876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 23 - 231
Target Start/End: Complemental strand, 50390231 - 50390023
Alignment:
| Q |
23 |
gaaatagcagcaggaagccaacctataaacaaaatcaaagcctttgtgtcatcatagtaaatagcagagtaaagctgtgtgattattgcaccactaagac |
122 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
50390231 |
gaaatagcggcaggaagccaacctataagcaaaatcaaagcctttgagtcattataataaatagcagagtaaagttgtgtgatgatagcaccactaagac |
50390132 |
T |
|
| Q |
123 |
caacatagcctttaagaattcccaaaaccgcgccacgagattcagggaaattcttaacacaagtcacaagtgaaccagtgtttgcaaaagactgagaatt |
222 |
Q |
| |
|
||| ||| ||||| |||||||||||||| || || |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50390131 |
caagatatccttttagaattcccaaaacagctccgcgagattcggggaaattcttaacacaagtaacaagtgaaccggtgtttgcaaaagactgagaatt |
50390032 |
T |
|
| Q |
223 |
agcacctat |
231 |
Q |
| |
|
||||||||| |
|
|
| T |
50390031 |
agcacctat |
50390023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 23 - 233
Target Start/End: Complemental strand, 50407118 - 50406908
Alignment:
| Q |
23 |
gaaatagcagcaggaagccaacctataaacaaaatcaaagcctttgtgtcatcatagtaaatagcagagtaaagctgtgtgattattgcaccactaagac |
122 |
Q |
| |
|
||||| ||||| ||||||||| | |||| |||||||||||| |||| ||||||| | ||||||||||| ||||| |||||||| || ||||||||||||| |
|
|
| T |
50407118 |
gaaattgcagctggaagccaagcaataagcaaaatcaaagcttttgggtcatcaaaataaatagcagaataaagttgtgtgataatagcaccactaagac |
50407019 |
T |
|
| Q |
123 |
caacatagcctttaagaattcccaaaaccgcgccacgagattcagggaaattcttaacacaagtcacaagtgaaccagtgtttgcaaaagactgagaatt |
222 |
Q |
| |
|
||||||| ||||| | ||| ||||| || | ||||||| ||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
50407018 |
caacataaccttttaaaatccccaacacaacaccacgagtttcggggaaattcttaacacaagtaacaagtgaaccagtgtttgaaaaagactgagaatt |
50406919 |
T |
|
| Q |
223 |
agcacctatac |
233 |
Q |
| |
|
||||||||||| |
|
|
| T |
50406918 |
agcacctatac |
50406908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 24224041 - 24223903
Alignment:
| Q |
7 |
tcgaagaatatcaaaagaaatagcagcagg-aagccaacctataaacaaaatcaaagcctttgtgtcatcatagtaaatagcagagtaaagctgtgtgat |
105 |
Q |
| |
|
|||||||| | |||||||||||||| || | |||||| | ||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
24224041 |
tcgaagaaaaacaaaagaaatagcaacatgtaagccagcttatgaacaaaatcaaagcctttgtgtcatcataataaatagcagagtaaagttgtgtgat |
24223942 |
T |
|
| Q |
106 |
tattgcaccactaagaccaacatagcctttaagaattcc |
144 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
24223941 |
gattgcaccactaagaccaacataacatttaagaattcc |
24223903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University