View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3739_high_4 (Length: 739)
Name: NF3739_high_4
Description: NF3739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3739_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 613; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 59 - 724
Target Start/End: Complemental strand, 36256047 - 36255370
Alignment:
| Q |
59 |
cttcaaggctcaatttgcatgttccactcagaggtgtgcttggtccatctccaagcaaatggaaaatggattcaagtatcttcttgcatacttggtctct |
158 |
Q |
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| T |
36256047 |
cttcaaggctcaatttgcatgttccactcaggggtgtgcttggtccatctccaagcaaatggaaaatggattcaagtatcttcttgcatacttggtctct |
36255948 |
T |
|
| Q |
159 |
gaaggagaatgaatatcctgaacttattgatgagcttttggagttgacagtgtataactttgagaagctgcataaggcaactagcttttttggtgaagct |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36255947 |
gaaggagaatgaatatcctgaacttattgatgagcttttggagttgacagtgtataactttgagaagctgcataaggcaactagcttttttggtgaagct |
36255848 |
T |
|
| Q |
259 |
aagacaataaagggctcttcggtttaccgagcatgcttgaagggtaatgcttctgcagttaaggttctcaaaggtggtgtctctacggagatgaacattc |
358 |
Q |
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| T |
36255847 |
aagacaataaagggctcttcggtttaccgagcatgcttgaagggtaatgcttctgcagttaaggttctcaaaagtggtgtctctacggagatgaacattc |
36255748 |
T |
|
| Q |
359 |
taaggagaattaaccatgccaacattacaaaactatctgggttctgtgtacacaaatgaaatacatcttttctatgagtttactgaaaacggttctcttg |
458 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36255747 |
taaggagaattaaccacgccaacattacaaaactatctgggttttgtgtacacaaatgaaatacatcttttctacgagtttactgaaaacggttctcttg |
36255648 |
T |
|
| Q |
459 |
ataattgtttcattttagcaagtgcttaaactctgtggctctaacttggaagcaaagagttcagattgctcagaatttgctgatgctttgaatcacctcc |
558 |
Q |
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| T |
36255647 |
ataattgtttcattttagcaagtgcttaaactctgtggctctaacttggaagcaaagagttcagattgctcagaatttgctgatgctttgaatcacctcc |
36255548 |
T |
|
| Q |
559 |
acatatccataagaattttaattagcatcttaacatatcatttaatcacatgacatgactactattattaaaaggaa------------aaatgatgctg |
646 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36255547 |
acatatccataagaattttaattaccatcttaacatatcatttaatcacatgacatgactactattattaaaaggaaaggagaacttttaaatgatgctg |
36255448 |
T |
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| Q |
647 |
tgtgacctttgtcttgctgatagttcaacctcaagcacaaatcctaaatttttcacattttccatttctacacctatg |
724 |
Q |
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| T |
36255447 |
tgtgacctttgtcttgctgatagttcaacctcaagcacaaatcctaaatttttcacattttccatttctacacctatg |
36255370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 202 - 561
Target Start/End: Complemental strand, 36263207 - 36262844
Alignment:
| Q |
202 |
ttgacagtgtataactttgagaagctgcataaggcaactagcttttttggtgaagctaagacaataaagggctcttcggtttaccgagcatgcttgaagg |
301 |
Q |
| |
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|||||||||||| | |||||| |||||||||| ||||| |||||||| |||||||||| | |||| ||| ||||| | |||||||||| ||||||||| |
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| T |
36263207 |
ttgacagtgtatgaatttgaggagctgcataaagcaacgagctttttcagtgaagctaacaggataaggggttcttcagcttaccgagcaagcttgaagg |
36263108 |
T |
|
| Q |
302 |
gtaatgcttctgcagttaaggttctcaaaggtggtgtctctacggagatgaacattctaaggagaattaaccatgccaacattacaaaactatctgggtt |
401 |
Q |
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|| ||| | |||||||||||||||||||||| | ||||||| |||||| || |||||||||||||| |||||||||||||| |||| | |||||| | |
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| T |
36263107 |
gtgatgatgctgcagttaaggttctcaaaggcgatgtctctgtggagatcaatattctaaggagaatcaaccatgccaacataacaaggatctctgggct |
36263008 |
T |
|
| Q |
402 |
ctgtgtacacaaatgaa--atacatcttttctatgagtttactgaaaacggttctcttgataatt-gtttcattttagcaagtgcttaaactctgtggct |
498 |
Q |
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| ||||||||||| ||| | | ||||| | ||||||||| | ||||| |||||||||||| ||| | |||| |||||||||||| |||||||||||||| |
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| T |
36263007 |
cagtgtacacaaaggaagcacatatcttgtttatgagtttgccgaaaatggttctcttgatgattggattcactttagcaagtgcataaactctgtggct |
36262908 |
T |
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| Q |
499 |
ctaacttggaagcaaagagttcagattgctcagaat-ttgctgatgctttgaatcacctccaca |
561 |
Q |
| |
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|| |||||||||||||||||||||||||||||| || | || |||||||||||| |||| |||| |
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| T |
36262907 |
ctgacttggaagcaaagagttcagattgctcaggatgtggcggatgctttgaattaccttcaca |
36262844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 23 - 197
Target Start/End: Complemental strand, 36263791 - 36263623
Alignment:
| Q |
23 |
ttgatgctcagaatatatacggattcacaaacctcacttcaaggctcaatttgcatgttccactcagaggtgtgcttggtccatctccaagcaaatggaa |
122 |
Q |
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||||||||||||||||||| ||| |||||||||||||| || |||||||| |||||||||||||| ||||||||||| | | |||||||||||| ||| |
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| T |
36263791 |
ttgatgctcagaatatatatggactcacaaacctcactgcagggctcaatatgcatgttccactc--aggtgtgcttgtcctacctccaagcaaattgaa |
36263694 |
T |
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| Q |
123 |
aatggattcaagtatcttcttgcatacttggtctctgaaggagaatgaatatcctgaacttattgatgagctttt |
197 |
Q |
| |
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||||||||||||||| ||||| ||||| ||||||| |||||| ||||||||||||||||||| |||| |||| |
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| T |
36263693 |
aatggattcaagtatattcttacatacctggtctccgaagga----gaatatcctgaacttattgctgagatttt |
36263623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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