View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3739_high_9 (Length: 473)
Name: NF3739_high_9
Description: NF3739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3739_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 13 - 458
Target Start/End: Original strand, 39065606 - 39066052
Alignment:
| Q |
13 |
aatataacaatggcagttgacaaagatgcttgaatattgtgggctgttcttacatttgaaatttcacggtcgacaagacacaagtnnnnnnnnn-gatat |
111 |
Q |
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| T |
39065606 |
aatataacaatggcagttgacaaagatgcttgaatattgtgggctgttcttatatttgaaatttcacggtcgacaagacacaagtaaaaaaaaaagatat |
39065705 |
T |
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| Q |
112 |
atgtataacatcaatgaatttagtgactcttgttgaccttaaatgatggtgtatcttttctaatctaaattttcttgcataataaaatttactgtctttc |
211 |
Q |
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| T |
39065706 |
atgtataacatcaatgaatttagtgactcttgttgaccttaaatgatggtgtatcttttctaatctaaattttcttgcataataaaatttactgtctctc |
39065805 |
T |
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| Q |
212 |
taaatcacgatcaataataatatcttcacgaggagtactagaaggttggattcttctcgaagatctatccctagtaagaattctacgaaaagagctcaac |
311 |
Q |
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| T |
39065806 |
taaatcacgatcaataataatatcttcacgaggagtactagaaggttggattcttctcgaagatctatccctagtgagaattctacgaaaagagctcaac |
39065905 |
T |
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| Q |
312 |
cttgaaatatttttgggggacacactaccaccgtccgatgtaccttcggatgttgatataaacaaagtgggaccctcacgtggctctgcttctggccgcg |
411 |
Q |
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| T |
39065906 |
cttgaaatatttttgggggacacactaccaccatccgatgtaccttcggatggtgatataaacaaagtgggaccctcacgtggctctgcttccggccgcg |
39066005 |
T |
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| Q |
412 |
gttcaaccttggttcgacaatttggacaggtggaatgcgaagctaac |
458 |
Q |
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| T |
39066006 |
gttcaaccttggttcgacaatttggacaggtggaatgcgaagctaac |
39066052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 458
Target Start/End: Original strand, 39032030 - 39032095
Alignment:
| Q |
393 |
ggctctgcttctggccgcggttcaaccttggttcgacaatttggacaggtggaatgcgaagctaac |
458 |
Q |
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| T |
39032030 |
ggctctggttcaagcctcggctcaaccttggttcgacaaattggacacgtggaatgcgaagctaac |
39032095 |
T |
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