View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3739_low_14 (Length: 430)
Name: NF3739_low_14
Description: NF3739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3739_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 24164901 - 24164492
Alignment:
| Q |
1 |
actatctccctttaagattcaaaagtctgacttgatcccaacatttatttctggcatggagacacctccaaagagtgatcactctgatcccgaaaatgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24164901 |
actatctccctttaagattcaaaagtctgacttgatcccaacatttatttctggcatggagacacctccaaagagtgatcactctgatcccgaaaatgat |
24164802 |
T |
|
| Q |
101 |
cttagatttgttgactcttctgttcatggtgctttaaatctcagtaagatacgtcagaactttccaaggaattttcagaaccttgaatcaaggtatggct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24164801 |
cttagatttgttgactcttctgttcatggtgctttaaatctcagtaagatacgtcagaactttccaaggaattttcagaaccttgaatcaaggtatggct |
24164702 |
T |
|
| Q |
201 |
aacagtagcatgaagacactttgcttttcttgtccttagcaacattactaatggtaatagaacttttttatcatatgcagaagaacaatgcaaggaggag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24164701 |
aacagtagcatgaagacactttgcttttcttgtccttagcaacattactagtggtaatagaacttttttatcatatgcagaagaacaatgcaaggaggag |
24164602 |
T |
|
| Q |
301 |
agcctttatcagctagcaaagttgataacaaacttttgaatggttcagcaagcaatcataaagaaggaaataatacatccatgcctgaatttagaagaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24164601 |
agcctttatcagctagcaaagttgataacaaacttttgaatggttcagcaagcaatcataaagaaggaaataatacatccatgcctgaatttagaagaag |
24164502 |
T |
|
| Q |
401 |
ccgatctact |
410 |
Q |
| |
|
|||||||||| |
|
|
| T |
24164501 |
ccgatctact |
24164492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 42232398 - 42232361
Alignment:
| Q |
165 |
caaggaattttcagaaccttgaatcaaggtatggctaa |
202 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
42232398 |
caaggaattctcagaaccatgaatcaaggtatggctaa |
42232361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 403
Target Start/End: Complemental strand, 42232290 - 42232162
Alignment:
| Q |
275 |
atgcagaagaacaatgcaaggaggagagcctttatcagctagcaaagttgataacaaacttttgaatggttcagcaagcaatcataaagaaggaaataat |
374 |
Q |
| |
|
||||||||||| ||||||| || || || || || ||||| |||||||| ||||||||||| |||| | || |||||| ||| ||||||| ||| |
|
|
| T |
42232290 |
atgcagaagaattatgcaagaagctgaaccattgtctgctagtaaagttgaaaacaaacttttaaatgttcaaggtcgcaatcttaaggaaggaaccaat |
42232191 |
T |
|
| Q |
375 |
acatccatgcctgaatttagaagaagccg |
403 |
Q |
| |
|
||||| |||| |||||||| ||||||||| |
|
|
| T |
42232190 |
acatctatgcatgaatttaaaagaagccg |
42232162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University