View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3739_low_15 (Length: 394)
Name: NF3739_low_15
Description: NF3739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3739_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 47059663 - 47060046
Alignment:
| Q |
1 |
cacatgtttcatcgaacggtgtgaacttgatgaaaatcagaatattcagttaattaaggatagagcgaggatgtttgctgatttgttgtataaattgatt |
100 |
Q |
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| T |
47059663 |
cacatgtttcatcgaacggtgtgaacttgatgaaaatcagaatattcagttaattaaggatagagcgaggatgtttgctgatttgttgtataaattgatt |
47059762 |
T |
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| Q |
101 |
gagaaagggcattcaagtgttaggaatacaattatggaagaagaatcctacgacaagttcttgaattgcaataaacaagtatagatatgtcttctcttag |
200 |
Q |
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| T |
47059763 |
gaaaaagggcattcaagtgttaggaatacaattatggaagaagaatcctacgacaagttcttgaattgcaataaacaagtatagatatgtcttctcttag |
47059862 |
T |
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| Q |
201 |
cactgagaatccaatggcatttcaagatctaaggatagcatgggcgcttaaattttgaaaaataggttagtatggggactttaggatgtatatttttatc |
300 |
Q |
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| T |
47059863 |
cactgagaatccaatggcatttcaagatctaaggatagcatgggcgcttaaattttgaattataggttagtatggggactttaggatgtatatttctatc |
47059962 |
T |
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| Q |
301 |
tctgattattataggttagtcttgaacatcttggtttggttttattttcatcttttacatctatagaatattggttttcctttg |
384 |
Q |
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| T |
47059963 |
tcttattattataggttagtcttgaacatcttggtttggttttattttcatcttttacatctatagaatattggttttcctttg |
47060046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 11726671 - 11726607
Alignment:
| Q |
79 |
tgatttgttgtataaattgattgagaaagggcattcaagtgttaggaatacaattatggaagaaga |
144 |
Q |
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| T |
11726671 |
tgattttttgtagaaattgcttgagaaagggtattcatgtgttatgaatac-attatggaagaaga |
11726607 |
T |
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