View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3739_low_16 (Length: 368)
Name: NF3739_low_16
Description: NF3739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3739_low_16 |
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| [»] chr7 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 21 - 368
Target Start/End: Original strand, 21814854 - 21815197
Alignment:
| Q |
21 |
ctctacatacctgaacgatcatatgatactaagatcgttatctgaactttctaacatatgcctgatcagcaggtcttactatcctattctgcttgcctta |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21814854 |
ctctacatacctgaacgatcatatgatactaagatcgttatctgaactttctaacatatgcctgatcagcaggtcttactatcctattctgcttgcctta |
21814953 |
T |
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| Q |
121 |
gctagcggtcagggaaactaagaccactaatctgaatactatgatagtatcttatcttattcatgtcatattcataacatattcttgaaactggacgatc |
220 |
Q |
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|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21814954 |
gc----ggtcagggaaactaaaaccactaatctgaatactatgatagtatcttatcttattcatgtcatattcataacatattcttgaaactggacgatc |
21815049 |
T |
|
| Q |
221 |
gagggatatgctaagatcgtcaacaacgtgccatcacaatcttgtcctgatgcataaccatatgggggattatcgtatttttgtgctatttattatattt |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
21815050 |
gagggatatgctaagatcgtcaacaacgtgccatcacaatcttgtcctgatgcataaccatatgggggattgtcgtatttttgtgctatttattatattt |
21815149 |
T |
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| Q |
321 |
caaaagttataattatcatgttttatttcatactatgttaattatgat |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21815150 |
caaaagttataattatcatgttttatttcatactatgttaattatgat |
21815197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 47203749 - 47203809
Alignment:
| Q |
296 |
tatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcatactat |
356 |
Q |
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| T |
47203749 |
tatttttatactatttattatatttcaaaagctataattttcatgttttatttcatactat |
47203809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 1454939 - 1454994
Alignment:
| Q |
24 |
tacatacctgaacgatcatatgatactaagatcgttatctgaactttctaacatat |
79 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
1454939 |
tacatacctgaacgatcatgagatactaagatcgttatctgaactatctaacatat |
1454994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 21 - 368
Target Start/End: Original strand, 16463394 - 16463737
Alignment:
| Q |
21 |
ctctacatacctgaacgatcatatgatactaagatcgttatctgaactttctaacatatgcctgatcagcaggtcttactatcctattctgcttgcctta |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16463394 |
ctctacatacctgaacgatcatatgatactaagatcgttatctgaactttctaacatatgcctgatcagcaggtcttactatcctattctgcttgcctta |
16463493 |
T |
|
| Q |
121 |
gctagcggtcagggaaactaagaccactaatctgaatactatgatagtatcttatcttattcatgtcatattcataacatattcttgaaactggacgatc |
220 |
Q |
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|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16463494 |
gc----ggtcagggaaactaaaaccactaatctgaatactatgatagtatcttatcttattcatgtcatattcataacatattcttgaaactggacgatc |
16463589 |
T |
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| Q |
221 |
gagggatatgctaagatcgtcaacaacgtgccatcacaatcttgtcctgatgcataaccatatgggggattatcgtatttttgtgctatttattatattt |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
16463590 |
gagggatatgctaagatcgtcaacaacgtgccatcacaatcttgtcctgatgcataaccatatgggggattgtcgtatttttgtgctatttattatattt |
16463689 |
T |
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| Q |
321 |
caaaagttataattatcatgttttatttcatactatgttaattatgat |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16463690 |
caaaagttataattatcatgttttatttcatactatgttaattatgat |
16463737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 296 - 351
Target Start/End: Original strand, 18336733 - 18336788
Alignment:
| Q |
296 |
tatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcat |
351 |
Q |
| |
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||||||| | |||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
18336733 |
tatttttatactatttattatatttcaaaagttatagttatcatgttttatttcat |
18336788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 26969467 - 26969396
Alignment:
| Q |
283 |
tgggggattatcgtatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcatact |
354 |
Q |
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||||||||| | ||||||| | ||||||||||||||||||||| ||||||| ||||| ||||||||||||| |
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| T |
26969467 |
tgggggattgttatatttttatactatttattatatttcaaaagctataattttcatgctttatttcatact |
26969396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 26973949 - 26973891
Alignment:
| Q |
296 |
tatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcatact |
354 |
Q |
| |
|
||||||| | ||||||||||||||||||||| ||||||| ||||| ||||||||||||| |
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| T |
26973949 |
tatttttatactatttattatatttcaaaagctataattttcatgctttatttcatact |
26973891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 7505618 - 7505560
Alignment:
| Q |
296 |
tatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcatact |
354 |
Q |
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||||||| | ||||||||||||||| ||||| ||||| | ||||| ||||||||||||| |
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| T |
7505618 |
tatttttatactatttattatattttaaaagctataaatttcatgctttatttcatact |
7505560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 273
Target Start/End: Complemental strand, 20189126 - 20189039
Alignment:
| Q |
187 |
catattcataacatattcttgaaactggacgatcgagggata-tgctaagatcgtcaacaacgtgccatcacaatcttgtcctgatgc |
273 |
Q |
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||||||||||||||| |||||||||||||||||| |||| | | ||||||||||||||| ||||||||| || |||||| |||||| |
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| T |
20189126 |
catattcataacataatcttgaaactggacgatcaggggaaagtactaagatcgtcaacagtgtgccatcataaacttgtcttgatgc |
20189039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 22146865 - 22146952
Alignment:
| Q |
187 |
catattcataacatattcttgaaactggacgatcgagggata-tgctaagatcgtcaacaacgtgccatcacaatcttgtcctgatgc |
273 |
Q |
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||||||||||||||| |||||||||||||||||| |||| | | ||||||||||||||| ||||||||| || |||||| |||||| |
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| T |
22146865 |
catattcataacataatcttgaaactggacgatcaggggaaagtactaagatcgtcaacagtgtgccatcataaacttgtcttgatgc |
22146952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 14923016 - 14923073
Alignment:
| Q |
295 |
gtatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcata |
352 |
Q |
| |
|
|||||||| | |||||| |||||||||||||||||||||| |||| ||| ||||||| |
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|
| T |
14923016 |
gtatttttatactatttgttatatttcaaaagttataattttcatactttgtttcata |
14923073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 14058563 - 14058621
Alignment:
| Q |
296 |
tatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcatact |
354 |
Q |
| |
|
||||||| | ||||||||||||||||||||| ||||||| ||||| ||||||||||||| |
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|
| T |
14058563 |
tatttttatactatttattatatttcaaaagctataattttcatgctttatttcatact |
14058621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 24854669 - 24854723
Alignment:
| Q |
19 |
tgctctacatacctgaacgatcatatgatactaagatcgttatctgaactttcta |
73 |
Q |
| |
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|||||||||| ||||||| ||| || ||| ||||||||||||||||||||||||| |
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| T |
24854669 |
tgctctacatgcctgaacaatcgtaagatgctaagatcgttatctgaactttcta |
24854723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 17304174 - 17304125
Alignment:
| Q |
19 |
tgctctacatacctgaacgatcatatgatactaagatcgttatctgaact |
68 |
Q |
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||||||| |||||| ||||||||| |||||||||||||||||||||||| |
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| T |
17304174 |
tgctctaaatacctcaacgatcatgagatactaagatcgttatctgaact |
17304125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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