View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3739_low_17 (Length: 365)

Name: NF3739_low_17
Description: NF3739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3739_low_17
NF3739_low_17
[»] chr7 (3 HSPs)
chr7 (18-343)||(7313411-7313735)
chr7 (174-319)||(42337458-42337601)
chr7 (250-319)||(39981856-39981925)
[»] chr2 (6 HSPs)
chr2 (18-343)||(34387441-34387761)
chr2 (178-319)||(33075575-33075714)
chr2 (178-295)||(3148304-3148421)
chr2 (178-319)||(27848710-27848849)
chr2 (243-319)||(45700349-45700425)
chr2 (241-319)||(28610778-28610856)
[»] chr1 (9 HSPs)
chr1 (18-343)||(24038713-24039037)
chr1 (18-343)||(52143721-52144040)
chr1 (174-341)||(29182624-29182791)
chr1 (178-332)||(43915817-43915971)
chr1 (178-319)||(16276508-16276647)
chr1 (178-319)||(30106650-30106791)
chr1 (243-319)||(5612592-5612668)
chr1 (243-319)||(26286944-26287020)
chr1 (229-332)||(8051450-8051552)
[»] chr8 (4 HSPs)
chr8 (174-343)||(39581122-39581291)
chr8 (19-173)||(39581341-39581494)
chr8 (174-343)||(44066362-44066531)
chr8 (178-319)||(45021179-45021318)
[»] chr4 (4 HSPs)
chr4 (174-343)||(31183468-31183632)
chr4 (23-174)||(31183269-31183419)
chr4 (244-319)||(1520328-1520403)
chr4 (178-319)||(56113286-56113425)
[»] chr3 (3 HSPs)
chr3 (178-330)||(22509311-22509463)
chr3 (178-319)||(37087480-37087619)
chr3 (243-319)||(54749611-54749687)
[»] chr5 (1 HSPs)
chr5 (174-319)||(4533505-4533648)
[»] chr6 (2 HSPs)
chr6 (170-328)||(3488935-3489087)
chr6 (174-319)||(15977001-15977144)


Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 7313735 - 7313411
Alignment:
Q  18 ggtttgacaaattaaataaaaatagaagcatggtttctgatttcaggtcaaacactcgttgtggctgcggtaagcaaacgttaaacaaaaattttccagc 117  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| | |||||||| ||||||||||||||||||||||||||||||| || |||||||||    
T  7313735 ggtttgacaaattaaataaaaacagaagcatggtttttgatttctgctcaaacacccgttgtggctgcggtaagcaaacgttaaacagaa-ttttccagc 7313637  T
Q  118 atggtggttatgttttgcggtgtggttatcaccggagcaagctcatccaaacatgatggtaatttgtcgaaaaacaatttgtggtggacaatatctaaca 217  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7313636 atggtggtgatgttttccggtgtggttatcaccggagcaagctcatccaaatatggtggtaatttgtcgaaaaacaatttgtggtggacaatatctaaca 7313537  T
Q  218 ataaagatggcgtttgaaaaatcataaaatatctccaatcaaaaattaaatttaaggatgagatatagaaggaagagatgataaatattatgtattttgt 317  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7313536 ataaagatggcgtttgaaaaatcagaaaatatctccaatcaaaaattaaatttaaggatgagatatagaaggaagagatgataaatattatgtatattgt 7313437  T
Q  318 tttataaatggtggtcataagcacca 343  Q
    |||||||||| |||||||||||||||    
T  7313436 tttataaatgatggtcataagcacca 7313411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 174 - 319
Target Start/End: Complemental strand, 42337601 - 42337458
Alignment:
Q  174 tggtaatttgtcgaaaaacaatttgtggtggacaatatctaacaataaagatggcg-tttgaaaaatcataaaatatctccaatcaaaaattaaatttaa 272  Q
    ||||||||| |||||||||  |||||||||| | | |||||||||| ||| ||| | |||||||| |||  |||||||||||||| |||| |||| |||     
T  42337601 tggtaatttatcgaaaaacgttttgtggtggtctagatctaacaatgaaggtggtggtttgaaaactca--aaatatctccaatccaaaaataaacttat 42337504  T
Q  273 ggatgagatatagaaggaagagatgataaatattatgtattttgttt 319  Q
    | |||||||| ||||||||| |   ||||||||||||||||||||||    
T  42337503 g-atgagatagagaaggaagggtgaataaatattatgtattttgttt 42337458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 39981925 - 39981856
Alignment:
Q  250 ctccaatcaaaaattaaatttaaggatgagatatagaaggaagagatgataaatattatgtattttgttt 319  Q
    |||| ||| |||||| ||||| |||| |||||| |||| ||||||| | | |||||||||||||||||||    
T  39981925 ctcctatctaaaatttaatttcaggaagagatagagaacgaagagagggtgaatattatgtattttgttt 39981856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 34387441 - 34387761
Alignment:
Q  18 ggtttgacaaattaaataaaaatagaagcatggtttctgatttcaggtcaaacactcgttgtggctgcggtaagcaaacgttaaacaaaaattttccagc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||  | ||||| ||  |||| |||| ||||||||||||||||||||||| |||||||||    
T  34387441 ggtttgacaaattaaataaaaatagaagcatggtttctgatttatgctcaaatacctgttggggctacggtaagcaaacgttaaacaaaa-ttttccagc 34387539  T
Q  118 atggtggttatgttttgcggtgtggttatcaccggagcaagctcatccaaacatgatggtaatttgtcgaaaaacaatttgtggtggacaatatctaaca 217  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    |||    
T  34387540 atggtggtgatgttttccggtgtggttatcaccggagcaagctcatccaaacatggtggtaatttgtcaaaaaacaatttgtggtggacaata----aca 34387635  T
Q  218 ataaagatggcgtttgaaaaatcataaaatatctccaatcaaaaattaaatttaaggatgagatatagaaggaagagatgataaatattatgtattttgt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34387636 ataaagatggcgtttgaaaaatcataaaatatctccaatcaaaaattaaatttaaggatgagatatagaaggaagagatgataaatattatgtattttgt 34387735  T
Q  318 tttataaatggtggtcataagcacca 343  Q
    ||||||||||||||||||||||||||    
T  34387736 tttataaatggtggtcataagcacca 34387761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 319
Target Start/End: Complemental strand, 33075714 - 33075575
Alignment:
Q  178 aatttgtcgaaaaacaatttgtggtggacaatatctaacaataaagatggcg-tttgaaaaatcataaaatatctccaatcaaaaattaaatttaaggat 276  Q
    |||||||||||||||  |||||||||| | | |||||||||| ||| ||| | |||||||| |||  |||||||||||||| |||| |||||||| | ||    
T  33075714 aatttgtcgaaaaacgttttgtggtggtctagatctaacaatgaaggtggtggtttgaaaactca--aaatatctccaatccaaaaataaatttatg-at 33075618  T
Q  277 gagatatagaaggaagagatgataaatattatgtattttgttt 319  Q
    |||||| ||||||||| |   ||||||||||||||||||||||    
T  33075617 gagatagagaaggaagggtgaataaatattatgtattttgttt 33075575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 178 - 295
Target Start/End: Complemental strand, 3148421 - 3148304
Alignment:
Q  178 aatttgtcgaaaaacaatttgtggtggacaatatctaacaataaagatggc-gtttgaaaaatcataaaatatctccaatcaaaaattaaatttaaggat 276  Q
    ||||| |||||||||| |||||||| | ||| |||||||||| ||| |||| ||||||||| ||| ||||||| ||||||| |||| |||||||| | ||    
T  3148421 aatttttcgaaaaacattttgtggtagtcaagatctaacaatgaaggtggcagtttgaaaactcaaaaaatatttccaatcgaaaaataaatttatg-at 3148323  T
Q  277 gagatatagaaggaagaga 295  Q
    |||||| ||||||||||||    
T  3148322 gagatagagaaggaagaga 3148304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 178 - 319
Target Start/End: Complemental strand, 27848849 - 27848710
Alignment:
Q  178 aatttgtcgaaaaacaatttgtggtggacaatatctaacaataaagatggcg-tttgaaaaatcataaaatatctccaatcaaaaattaaatttaaggat 276  Q
    |||||||||||||||  |||||||||| | | |||||||||| ||| ||| | |||||||| |||  |||||||||||||| |||| |||||||| | |     
T  27848849 aatttgtcgaaaaacgttttgtggtggtctagatctaacaatgaaggtggtggtttgaaaactca--aaatatctccaatccaaaaataaatttatgaa- 27848753  T
Q  277 gagatatagaaggaagagatgataaatattatgtattttgttt 319  Q
    |||||| ||||||||| |   ||||||||||||||||||||||    
T  27848752 gagatagagaaggaagggtgaataaatattatgtattttgttt 27848710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 243 - 319
Target Start/End: Original strand, 45700349 - 45700425
Alignment:
Q  243 aaaatatctccaatcaaaaattaaatttaaggatgagatatagaaggaagagatgataaatattatgtattttgttt 319  Q
    ||||| ||||| |||||||||| ||||| |||| |||||| |||| ||||||| | | |||||||||||||||||||    
T  45700349 aaaatgtctcctatcaaaaatttaatttcaggaagagatagagaacgaagagagggtgaatattatgtattttgttt 45700425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 319
Target Start/End: Original strand, 28610778 - 28610856
Alignment:
Q  241 ataaaatatctccaatcaaaaattaaatttaaggatgagatatagaaggaagagatgataaatattatgtattttgttt 319  Q
    |||| |||||||| ||| |||||||||||| || |||||||| |||| |||||||  ||  | ||||||||||||||||    
T  28610778 ataatatatctccgatccaaaattaaatttcagaatgagatagagaaagaagagagtatgtagattatgtattttgttt 28610856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 24039037 - 24038713
Alignment:
Q  18 ggtttgacaaattaaataaaaatagaagcatggtttctgatttcaggtcaaacactcgttgtggctgcggtaagcaaacgttaaacaaaaattttccagc 117  Q
    |||||||||||||||||||||  ||||||||||||||| |||||   ||||||||  ||||||| |||||||||||||||||||| | || |||||||||    
T  24039037 ggtttgacaaattaaataaaaccagaagcatggtttctaatttctactcaaacacctgttgtggttgcggtaagcaaacgttaaatagaa-ttttccagc 24038939  T
Q  118 atggtggttatgttttgcggtgtggttatcaccggagcaagctcatccaaacatgatggtaatttgtcgaaaaacaatttgtggtggacaatatctaaca 217  Q
    ||| |||| ||||||| ||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24038938 atgttggtgatgttttccggtgtgcttatcactggagcaagctcatccaaacatggtggtaatttgtcgaaaaacaatttgtggtggacaatatctaaca 24038839  T
Q  218 ataaagatggcgtttgaaaaatcataaaatatctccaatcaaaaattaaatttaaggatgagatatagaaggaagagatgataaatattatgtattttgt 317  Q
    ||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24038838 ataaagaggacgtttgaaaaatcagaaaatatctccaatcaaaaattaaatttaaggatgagatatagaaggaagagatgataaatattatgtattttgt 24038739  T
Q  318 tttataaatggtggtcataagcacca 343  Q
    ||||||||||||||||||||||||||    
T  24038738 tttataaatggtggtcataagcacca 24038713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 52143721 - 52144040
Alignment:
Q  18 ggtttgacaaattaaataaaaatagaagcatggtttctgatttcaggtcaaacactcgttgtggctgcggtaagcaaacgttaaacaaaaattttccagc 117  Q
    |||||||||||||||||||||| ||||||||||||||||||||  | |||||||| |||||||||||||||||     |||||| || || ||||| |||    
T  52143721 ggtttgacaaattaaataaaaacagaagcatggtttctgatttatgctcaaacacccgttgtggctgcggtaa-----cgttaatcagaa-ttttctagc 52143814  T
Q  118 atggtggttatgttttgcggtgtggttatcaccggagcaagctcatccaaacatgatggtaatttgtcgaaaaacaatttgtggtggacaatatctaaca 217  Q
    |||||||  ||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | ||| ||||||||||||||||||||    
T  52143815 atggtggcgatgttttccggtgtggttatcaccggagcaagctcattcaaacatggtggtaatttgtcgaaaatctattagtggtggacaatatctaaca 52143914  T
Q  218 ataaagatggcgtttgaaaaatcataaaatatctccaatcaaaaattaaatttaaggatgagatatagaaggaagagatgataaatattatgtattttgt 317  Q
    ||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  52143915 ataaaaatggcgtttgaaaaatcaaaaaatatctccaatcaaaaactaaatttaaggatgagatatagaaggaagagatgataaatattatgtactttat 52144014  T
Q  318 tttataaatggtggtcataagcacca 343  Q
    ||||||||||||||||||||| ||||    
T  52144015 tttataaatggtggtcataagaacca 52144040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 174 - 341
Target Start/End: Complemental strand, 29182791 - 29182624
Alignment:
Q  174 tggtaatttgtcgaaaaacaatttgtggtggacaatatctaacaataaagatggcgtttgaaaaatcataaaatatctccaatcaaaaattaaatttaag 273  Q
    ||||||||||||||| |||||||||||||||||   |||| ||||||||||| ||||||||||| ||| ||||||||| |||| ||||| |||||||||     
T  29182791 tggtaatttgtcgaagaacaatttgtggtggacggaatctgacaataaagatagcgtttgaaaactcagaaaatatcttcaataaaaaagtaaatttaat 29182692  T
Q  274 gatgagatatagaaggaagagatgataaatattatgtattttgttttataaatggtggtcataagcac 341  Q
     |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  29182691 aatgatatatagaaggaagagatgataaatattatgtattttgtttgataaatggtggtcagaagcac 29182624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 178 - 332
Target Start/End: Original strand, 43915817 - 43915971
Alignment:
Q  178 aatttgtcgaaaaacaatttgtggtggacaatatctaacaataaagatggcg-tttgaaaaatcataaaatatctccaatcaaaaattaaatttaaggat 276  Q
    |||||||||||||||| |||||||| | ||| |||||||||| ||| ||||| |||||||| ||| ||||||| ||||||| |||| ||||||||   ||    
T  43915817 aatttgtcgaaaaacattttgtggtagtcaagatctaacaatgaaggtggcggtttgaaaactcaaaaaatatttccaatcgaaaaataaatttata-at 43915915  T
Q  277 gagatatagaaggaagagatgataaatattatgtattttgttttataaatggtggt 332  Q
    |||||| ||||||||||||| || ||||||||||||||||||| | ||||| ||||    
T  43915916 gagatagagaaggaagagataatgaatattatgtattttgtttgacaaatgatggt 43915971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 178 - 319
Target Start/End: Original strand, 16276508 - 16276647
Alignment:
Q  178 aatttgtcgaaaaacaatttgtggtggacaatatctaacaataaagatggcg-tttgaaaaatcataaaatatctccaatcaaaaattaaatttaaggat 276  Q
    |||||||||||||||  |||||||||  | | |||||||||| ||| ||| | |||||||| |||  |||||||||||||| |||| |||||||| | ||    
T  16276508 aatttgtcgaaaaacgttttgtggtgatctagatctaacaatgaaggtggtggtttgaaaactca--aaatatctccaatccaaaaataaatttatg-at 16276604  T
Q  277 gagatatagaaggaagagatgataaatattatgtattttgttt 319  Q
    |||||| ||||||||| |   ||||||||||||||||||||||    
T  16276605 gagatagagaaggaagggtgaataaatattatgtattttgttt 16276647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 319
Target Start/End: Original strand, 30106650 - 30106791
Alignment:
Q  178 aatttgtcgaaaaacaatttgtggtggacaatatctaacaataaagatggcg-tttgaaaaatcataaaatatctccaatcaaaaattaaatttaaggat 276  Q
    ||||||| |||||||| | | |||| | ||| ||||| |||| ||| ||||| |||||||| ||| ||||||| | ||||| |||| |||||||| | ||    
T  30106650 aatttgttgaaaaacattctctggtagtcaagatctatcaatgaaggtggcggtttgaaaactcaaaaaatattttcaatcgaaaaataaatttatg-at 30106748  T
Q  277 gagatatagaaggaagagatgataaatattatgtattttgttt 319  Q
    |||||| ||||||||||||  || |||||||||||||||||||    
T  30106749 gagatagagaaggaagagagaatgaatattatgtattttgttt 30106791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 243 - 319
Target Start/End: Original strand, 5612592 - 5612668
Alignment:
Q  243 aaaatatctccaatcaaaaattaaatttaaggatgagatatagaaggaagagatgataaatattatgtattttgttt 319  Q
    ||||| ||||| ||| |||||||||||| ||||||||||| ||||  |||||||||  ||||||| |||||||||||    
T  5612592 aaaatgtctccgatccaaaattaaattttaggatgagatagagaacaaagagatgacgaatattacgtattttgttt 5612668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 243 - 319
Target Start/End: Complemental strand, 26287020 - 26286944
Alignment:
Q  243 aaaatatctccaatcaaaaattaaatttaaggatgagatatagaaggaagagatgataaatattatgtattttgttt 319  Q
    ||||| ||||| ||| |||||||||||| ||||||||||| ||||  |||||||||  ||||||||| |||||||||    
T  26287020 aaaatgtctccgatccaaaattaaattttaggatgagatagagaacaaagagatgacgaatattatgaattttgttt 26286944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 332
Target Start/End: Complemental strand, 8051552 - 8051450
Alignment:
Q  229 gtttgaaaaatcataaaatatctccaatcaaaaattaaatttaaggatgagatatagaaggaagagatgataaatattatgtattttgttttataaatgg 328  Q
    ||||||||| ||| ||||||||||| ||| |||| ||||||| | ||||||||| ||||||||| |   || ||||||||||||||||||| | |||||     
T  8051552 gtttgaaaactcaaaaaatatctcctatccaaaaataaattt-atgatgagatagagaaggaagggtgaatgaatattatgtattttgtttgacaaatga 8051454  T
Q  329 tggt 332  Q
    ||||    
T  8051453 tggt 8051450  T

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Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 174 - 343
Target Start/End: Complemental strand, 39581291 - 39581122
Alignment:
Q  174 tggtaatttgtcgaaaaacaatttgtggtggacaatatctaacaataaagatggcgtttgaaaaatcataaaatatctccaatcaaaaattaaatttaag 273  Q
    ||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  39581291 tggtaatatgtcgaaaagcaatttgtggtggacgatatctaacaataaagatggcgtttgaaaaatcagaaaatatctccaatcaaaaaataaatttaag 39581192  T
Q  274 gatgagatatagaaggaagagatgataaatattatgtattttgttttataaatggtggtcataagcacca 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39581191 gatgagatatagaaggaagagatgataaatattatgtattttgttttataaatggtggtcataagcacca 39581122  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 39581494 - 39581341
Alignment:
Q  19 gtttgacaaattaaataaaaatagaagcatggtttctgatttcaggtcaaacactcgttgtggctgcggtaagcaaacgttaaacaaaaattttccagca 118  Q
    ||||||||||||||||||||| | ||||||||||||||||||  | |||||||  |||||||| |||||||||||||| |||||| | ||||||||||||    
T  39581494 gtttgacaaattaaataaaaacataagcatggtttctgatttatgctcaaacatccgttgtggttgcggtaagcaaacattaaac-ataattttccagca 39581396  T
Q  119 tggtggttatgttttgcggtgtggttatcaccggagcaagctcatccaaacatga 173  Q
    ||||||| ||||||| | ||| ||||||| |||||||||||||||||||||||||    
T  39581395 tggtggtgatgttttccagtgcggttatcgccggagcaagctcatccaaacatga 39581341  T

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Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 174 - 343
Target Start/End: Original strand, 44066362 - 44066531
Alignment:
Q  174 tggtaatttgtcgaaaaacaatttgtggtggacaatatctaacaataaagatggcgtttgaaaaatcataaaatatctccaatcaaaaattaaatttaag 273  Q
    ||||||| | |||||||||||||| |||||| ||| || ||||||||||  ||||| ||  ||| ||| |||||| || | |||||||| ||||||||||    
T  44066362 tggtaatctatcgaaaaacaatttatggtggtcaagatttaacaataaaagtggcggtttgaaactcaaaaaataccttcgatcaaaaaataaatttaag 44066461  T
Q  274 gatgagatatagaaggaagagatgataaatattatgtattttgttttataaatggtggtcataagcacca 343  Q
    ||||||||| |||||||||| | ||| ||||||||||||||||||| ||||| |||||||| || |||||    
T  44066462 gatgagatagagaaggaagatacgatgaatattatgtattttgtttgataaaaggtggtcaaaaacacca 44066531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 319
Target Start/End: Original strand, 45021179 - 45021318
Alignment:
Q  178 aatttgtcgaaaaacaatttgtggtggacaatatctaacaataaagatggcg-tttgaaaaatcataaaatatctccaatcaaaaattaaatttaaggat 276  Q
    ||||||| |||||||  |||||||||| | | |||||||||| |||  || | |||||||| |||  |||||||||||||| |||| |||||||| | ||    
T  45021179 aatttgttgaaaaacgttttgtggtggtctagatctaacaatgaaggcggtggtttgaaaactca--aaatatctccaatccaaaaataaatttatg-at 45021275  T
Q  277 gagatatagaaggaagagatgataaatattatgtattttgttt 319  Q
    |||||| ||||||||| |   ||||||||||||||||||||||    
T  45021276 gagatagagaaggaagggtgaataaatattatgtattttgttt 45021318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 174 - 343
Target Start/End: Original strand, 31183468 - 31183632
Alignment:
Q  174 tggtaatttgtcgaaaaacaatttgtggtggacaatatctaacaataaagatggcgtttgaaaaatcataaaatatctccaatcaaaaattaaatttaag 273  Q
    ||||||||||||||||||||||||||||||     |||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  31183468 tggtaatttgtcgaaaaacaatttgtggtg-----tatctaactataaagatggcgtttgaaaaatcagaaaatatctccaatcaaaaaataaatttaag 31183562  T
Q  274 gatgagatatagaaggaagagatgataaatattatgtattttgttttataaatggtggtcataagcacca 343  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  31183563 gatgagatatagaaggaagagatgataaatattatgtatttcattttataaatggtggtcataagcacca 31183632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 23 - 174
Target Start/End: Original strand, 31183269 - 31183419
Alignment:
Q  23 gacaaattaaataaaaatagaagcatggtttctgatttcaggtcaaacactcgttgtggctgcggtaagcaaacgttaaacaaaaattttccagcatggt 122  Q
    ||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||    
T  31183269 gacaaattaaataaaaacagaagcatggtttctgatttctgctcaaacacccgttgtggttgcggtaagcaaacgttaaac-agaattttccagcatggt 31183367  T
Q  123 ggttatgttttgcggtgtggttatcaccggagcaagctcatccaaacatgat 174  Q
    ||| ||||||| | ||| ||||||| ||||||||||||||||||||||||||    
T  31183368 ggtgatgttttcctgtgcggttatcgccggagcaagctcatccaaacatgat 31183419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 319
Target Start/End: Complemental strand, 1520403 - 1520328
Alignment:
Q  244 aaatatctccaatcaaaaattaaatttaaggatgagatatagaaggaagagatgataaatattatgtattttgttt 319  Q
    |||| ||||| ||| |||||||||||| ||||||||||| ||||  |||||||||  |||||||||||||||||||    
T  1520403 aaatgtctccgatccaaaattaaattttaggatgagatagagaacaaagagatgacgaatattatgtattttgttt 1520328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 319
Target Start/End: Original strand, 56113286 - 56113425
Alignment:
Q  178 aatttgtcgaaaaacaatttgtggtggacaatatctaacaataaagatggcg-tttgaaaaatcataaaatatctccaatcaaaaattaaatttaaggat 276  Q
    ||||||||||||||   |||||||||| | | |||||||||| ||| ||| | |||||||| |||  |||||||||||||| |||| |||||| | | ||    
T  56113286 aatttgtcgaaaaatgttttgtggtggtctagatctaacaatgaaggtggtggtttgaaaactca--aaatatctccaatccaaaaataaattcatg-at 56113382  T
Q  277 gagatatagaaggaagagatgataaatattatgtattttgttt 319  Q
    |||||| ||||||||| |   ||||||||||||||||||||||    
T  56113383 gagatagagaaggaagggtgaataaatattatgtattttgttt 56113425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 178 - 330
Target Start/End: Complemental strand, 22509463 - 22509311
Alignment:
Q  178 aatttgtcgaaaaacaatttgtggtggacaatatctaacaataaagatggcgtttgaaaaatcataaaatatctccaatcaaaaattaaatttaaggatg 277  Q
    |||||||||||||||  | |||||| | ||| |||||||||| |||  | || ||||||| ||| ||||||||||| |||| ||| ||||||||| ||||    
T  22509463 aatttgtcgaaaaacgttatgtggttgtcaagatctaacaatgaaggcgacggttgaaaactcaaaaaatatctccgatcacaaaataaatttaatgatg 22509364  T
Q  278 agatatagaaggaagagatgataaatattatgtattttgttttataaatggtg 330  Q
    ||||| |||||||||||||||| ||||||| ||||||||||| ||||||||||    
T  22509363 agatagagaaggaagagatgatgaatattaagtattttgtttgataaatggtg 22509311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 178 - 319
Target Start/End: Complemental strand, 37087619 - 37087480
Alignment:
Q  178 aatttgtcgaaaaacaatttgtggtggacaatatctaacaataaagatggcg-tttgaaaaatcataaaatatctccaatcaaaaattaaatttaaggat 276  Q
    |||||||||||||||  |||||||||| | | |||||||||| ||| ||| | |||||||| |||  |||||||| ||||| |||| |||||||| | ||    
T  37087619 aatttgtcgaaaaacgttttgtggtggtctagatctaacaatgaaggtggtggtttgaaaactca--aaatatcttcaatccaaaaataaatttatg-at 37087523  T
Q  277 gagatatagaaggaagagatgataaatattatgtattttgttt 319  Q
    |||||| ||||||||| |   ||||||||||||||||||||||    
T  37087522 gagatagagaaggaagggtgaataaatattatgtattttgttt 37087480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 319
Target Start/End: Complemental strand, 54749687 - 54749611
Alignment:
Q  243 aaaatatctccaatcaaaaattaaatttaaggatgagatatagaaggaagagatgataaatattatgtattttgttt 319  Q
    ||||| ||||| ||| |||||||||||| ||||||||||| ||||  |||||||||  |||||||||||||||||||    
T  54749687 aaaatgtctccgatccaaaattaaattttaggatgagatagagaacaaagagatgacgaatattatgtattttgttt 54749611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 174 - 319
Target Start/End: Complemental strand, 4533648 - 4533505
Alignment:
Q  174 tggtaatttgtcgaaaaacaatttgtggtggacaatatctaacaataaagatggcg-tttgaaaaatcataaaatatctccaatcaaaaattaaatttaa 272  Q
    |||||||||||||||||||  |||||||||| | | |||||||||| ||| ||| | |||||||| |||  |||||||||||||| |||| ||||||||     
T  4533648 tggtaatttgtcgaaaaacgttttgtggtggtctagatctaacaatgaaggtggtggtttgaaaactca--aaatatctccaatccaaaaataaatttat 4533551  T
Q  273 ggatgagatatagaaggaagagatgataaatattatgtattttgttt 319  Q
    | |||||||| ||||||||| |   ||||||||||||||||||||||    
T  4533550 g-atgagatagagaaggaagggtgaataaatattatgtattttgttt 4533505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 170 - 328
Target Start/End: Original strand, 3488935 - 3489087
Alignment:
Q  170 atgatggtaatttgtcgaaaaacaatttgtggtggacaatatctaacaataaagatggc-gtttgaaaaatcataaaatatctccaatcaaaaattaaat 268  Q
    |||||||||||||||||||||||| ||||| |||| ||| ||||||||||||||||||| ||||||||| ||    |||||||||  | |||  ||   |    
T  3488935 atgatggtaatttgtcgaaaaacagtttgttgtggtcaagatctaacaataaagatggcggtttgaaaactc----aatatctccgctaaaagttt---t 3489027  T
Q  269 ttaaggatgagatatagaaggaagagatgataaatattatgtattttgttttataaatgg 328  Q
    ||||  |||||||| |||||||| ||||||   |||||||||||||||||| ||||||||    
T  3489028 ttaataatgagatagagaaggaaaagatgaaggatattatgtattttgtttgataaatgg 3489087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 174 - 319
Target Start/End: Complemental strand, 15977144 - 15977001
Alignment:
Q  174 tggtaatttgtcgaaaaacaatttgtggtggacaatatctaacaataaagatggcg-tttgaaaaatcataaaatatctccaatcaaaaattaaatttaa 272  Q
    ||||||||| |||||||||  |||||||||| | | |||||||||| ||| ||| | |||||||| |||  |||||||||||||| |||| |||| |||     
T  15977144 tggtaatttatcgaaaaacgttttgtggtggtctaaatctaacaatgaaggtggtggtttgaaaactca--aaatatctccaatccaaaaataaacttat 15977047  T
Q  273 ggatgagatatagaaggaagagatgataaatattatgtattttgttt 319  Q
    | |||||||| ||||||||| |   ||||||||||||||||||||||    
T  15977046 g-atgagatagagaaggaagggtgaataaatattatgtattttgttt 15977001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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