View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3739_low_18 (Length: 358)
Name: NF3739_low_18
Description: NF3739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3739_low_18 |
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| [»] scaffold0171 (3 HSPs) |
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| [»] scaffold0181 (1 HSPs) |
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Alignment Details
Target: scaffold0171 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 7 - 342
Target Start/End: Complemental strand, 25937 - 25602
Alignment:
| Q |
7 |
gagaagaaattaaagcgaggaatagggacacacatcaaaggatgagcccttggaagggtcgtcgaagctttctcttccatgctaactgttccattaccac |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25937 |
gagaagaaattaaagcgaggaatagggacacacatcaaaggatgagcccttggaagggtcgtcgaagctttctcttccatgctaactgttccattaccac |
25838 |
T |
|
| Q |
107 |
caaccttcaattcaaaacactgaataatagcagcaagatttgttggaacaacttgaagcgcgaacgaggtaccaggacaagctcttcttccaaatccaaa |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
25837 |
caaccttcaattcaaaacactgaataatagcagcaagatttgttggaacaacttgaagcgcgaatgaggtaccaggacaagctcttcttccaaatccaaa |
25738 |
T |
|
| Q |
207 |
tggtataaattggaaattttgtccccttagatcaaacttattcccttcactcataaacctctctggtttaaactcaagtggattttcccatagtttaggg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25737 |
tggtataaattggaaattttgtccccttagatcaaacttattcccttcactcataaacctctctggtttaaactcaagtggattttcccatagtttaggg |
25638 |
T |
|
| Q |
307 |
ttcctattcattgaccaaaaattaacatataaaata |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
25637 |
ttcctattcattgaccaaaaattaacatataaaata |
25602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 22 - 342
Target Start/End: Complemental strand, 12287 - 11967
Alignment:
| Q |
22 |
cgaggaatagggacacacatcaaaggatgagcccttggaagggtcgtcgaagctttctcttccatgctaactgttccattaccaccaaccttcaattcaa |
121 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| || |||| ||||||||||||| |||||||||||| ||||||||| ||| |||||| |
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|
| T |
12287 |
cgaggaatagggacacatatcaaaggatgagcccttggaagggtggttgaaggtttctcttccatgttaactgttccatcaccaccaactttccattcaa |
12188 |
T |
|
| Q |
122 |
aacactgaataatagcagcaagatttgttggaacaacttgaagcgcgaacgaggtaccaggacaagctcttcttccaaatccaaatggtataaattggaa |
221 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||| ||||||| || || |||| ||| || ||| | | ||||||| ||| ||||| |||| |||||| |
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|
| T |
12187 |
aacactgaatcattgcagcaagatttgttggaacagcttgaagtgctaatgaggcaccggggcaaccccgtcttccagttccgaatggcataagttggaa |
12088 |
T |
|
| Q |
222 |
attttgtccccttagatcaaacttattcccttcactcataaacctctctggtttaaactcaagtggattttcccatagtttagggttcctattcattgac |
321 |
Q |
| |
|
|||||||||||| | ||||||||||||| ||||||||||||||||||| |||||||||||| |||||| ||||| | ||| |||| ||| ||||||| |
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|
| T |
12087 |
attttgtcccctcacatcaaacttattctcttcactcataaacctctccggtttaaactcatatggattctcccacaattttgggtcccttcccattgac |
11988 |
T |
|
| Q |
322 |
caaaaattaacatataaaata |
342 |
Q |
| |
|
|| ||||||||| |||||||| |
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|
| T |
11987 |
cacaaattaacaaataaaata |
11967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 14 - 296
Target Start/End: Complemental strand, 20081 - 19799
Alignment:
| Q |
14 |
aattaaagcgaggaatagggacacacatcaaaggatgagcccttggaagggtcgtcgaagctttctcttccatgctaactgttccattaccaccaacctt |
113 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||| |||| | |||||||| |||||| ||||| ||||||||||||||||||| |
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|
| T |
20081 |
aattaaagcgaggaatcgggacacaaatcaaaggatgagcccttggaaggctcgtggccgctttctcatccatgttaacttttccattaccaccaacctt |
19982 |
T |
|
| Q |
114 |
caattcaaaacactgaataatagcagcaagatttgttggaacaacttgaagcgcgaacgaggtaccaggacaagctcttcttccaaatccaaatggtata |
213 |
Q |
| |
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| |||||||||||||||| || || ||||||||||| |||||| | ||||| || || || | |||||| |||| || |||||| ||||||||| ||| |
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| T |
19981 |
ccattcaaaacactgaatcattgcggcaagatttgtcggaacagcctgaagtgctaatgaagcaccagggcaagacctccttccagttccaaatggcata |
19882 |
T |
|
| Q |
214 |
aattggaaattttgtccccttagatcaaacttattcccttcactcataaacctctctggtttaaactcaagtggattttccca |
296 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||| |
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|
| T |
19881 |
aattggaaattttgtcccctcacatcaaacttattctcttcactcataaacctctctggtttaaactcatatggattctccca |
19799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 16 - 341
Target Start/End: Original strand, 9554 - 9879
Alignment:
| Q |
16 |
ttaaagcgaggaatagggacacacatcaaaggatgagcccttggaagggtcgtcgaagctttctcttccatgctaactgttccattaccaccaaccttca |
115 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||||||| | | ||||||||||||| |||||||||||| ||||| ||||||| |
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|
| T |
9554 |
ttaaaacgaggaatagggacacacatcaaaggatgagccctaggaagggtcaaagctggtttctcttccatgttaactgttccatcaccactaaccttcc |
9653 |
T |
|
| Q |
116 |
attcaaaacactgaataatagcagcaagatttgttggaacaacttgaagcgcgaacgaggtaccaggacaagctcttcttccaaatccaaatggtataaa |
215 |
Q |
| |
|
| | |||||| ||||| || ||||||||||||||||||||| ||||||| || || || | |||||| ||||| ||||||||| ||||||||| ||| | |
|
|
| T |
9654 |
aataaaaacattgaatcattgcagcaagatttgttggaacagcttgaagtgctaatgaagcaccagggcaagcccttcttccagttccaaatggcatata |
9753 |
T |
|
| Q |
216 |
ttggaaattttgtccccttagatcaaacttattcccttcactcataaacctctctggtttaaactcaagtggattttcccatagtttagggttcctattc |
315 |
Q |
| |
|
||| ||||| |||||| | | ||||||||||||||||||||||||||||||||| || || ||||| || ||||||||||| ||||| || | | || | |
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|
| T |
9754 |
ttgcaaattctgtcccttaaaatcaaacttattcccttcactcataaacctctccggcttgaactcgagcggattttcccacagtttgggatccttaccc |
9853 |
T |
|
| Q |
316 |
attgaccaaaaattaacatataaaat |
341 |
Q |
| |
|
|||||||| |||| |||| ||||||| |
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|
| T |
9854 |
attgaccacaaatcaacaaataaaat |
9879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 34 - 296
Target Start/End: Complemental strand, 24941278 - 24941013
Alignment:
| Q |
34 |
acacacatcaaaggatgagcccttggaagggtcgtcgaagctttctcttccatgctaactgttccattaccaccaaccttcaattcaaaacactgaataa |
133 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | | ||||||||||||| ||||| | ||||||||| |||| ||| |||||||||||||||| | |
|
|
| T |
24941278 |
acacaaatcaaaggatgagcccttggaagggttacagcggatttctcttccatgttaactttcccattaccatcaacattccattcaaaacactgaatca |
24941179 |
T |
|
| Q |
134 |
tagcagcaagatttgttggaacaacttgaagcgcgaacgaggtaccaggacaagctcttcttccaaatccaaatggtataaattggaaattttgtcccct |
233 |
Q |
| |
|
| |||||||||||||| |||||||||||||| || || | || |||||| ||||| ||||| ||| ||||||||| |||| |||||||||||||||||| |
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|
| T |
24941178 |
ttgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagttggaaattttgtcccct |
24941079 |
T |
|
| Q |
234 |
tagatcaaacttattccct---tcactcataaacctctctggtttaaactcaagtggattttccca |
296 |
Q |
| |
|
||| |||||||| || |||||||||||||||||||| | ||||||||||| |||||||| |
|
|
| T |
24941078 |
cgcatcgaacttattatcttcctcactcataaacctctctggcctgaactcaagtgggttttccca |
24941013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 34 - 340
Target Start/End: Complemental strand, 25169714 - 25169405
Alignment:
| Q |
34 |
acacacatcaaaggatgagcccttggaagggtcgtcgaagctttctcttccatgctaactgttccattaccaccaaccttcaattcaaaacactgaataa |
133 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | | ||||||||||||| |||| | ||||||||| |||| ||| |||||||||||||||| | |
|
|
| T |
25169714 |
acacaaatcaaaggatgagcccttggaagggtcacggccggtttctcttccatgtcaactttcccattaccatcaacattccattcaaaacactgaatca |
25169615 |
T |
|
| Q |
134 |
tagcagcaagatttgttggaacaacttgaagcgcgaacgaggtaccaggacaagctcttcttccaaatccaaatggtataaattggaaattttgtcccct |
233 |
Q |
| |
|
| |||||||||||||| |||||||||||||| || || || |||||| ||||| ||||| ||| ||||||||| |||| |||||||||||| ||||| |
|
|
| T |
25169614 |
ttgcagcaagatttgtgggaacaacttgaagtgctaataagtaaccagggcaagcccttctaccagttccaaatggcataagttggaaattttgccccct |
25169515 |
T |
|
| Q |
234 |
tagatcaaac---ttattcccttcactcataaacctctctggtttaaactcaagtggattttcccatagtttagggttcctattcattgaccaaaaatta |
330 |
Q |
| |
|
| ||| ||| ||||| |||||| ||||||||||||||| | ||||||||||| |||||||| | ||| |||| ||| ||||||||| || ||| |
|
|
| T |
25169514 |
catatcgaacttgttattttcttcacacataaacctctctggcctgaactcaagtgggttttcccacaatttggggtctctacccattgaccataagtta |
25169415 |
T |
|
| Q |
331 |
acatataaaa |
340 |
Q |
| |
|
||| |||||| |
|
|
| T |
25169414 |
acaaataaaa |
25169405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 149 - 342
Target Start/End: Original strand, 38807608 - 38807801
Alignment:
| Q |
149 |
ttggaacaacttgaagcgcgaacgaggtaccaggacaagctcttcttccaaatccaaatggtataaattggaaattttgtccccttagatcaaacttatt |
248 |
Q |
| |
|
|||||||||||||||| || || ||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||| |
|
|
| T |
38807608 |
ttggaacaacttgaagtgctaatgagacaccagggcaagctcttcttccagttccaaatggtataaattggaaattttgtcccctcacatctaacttatt |
38807707 |
T |
|
| Q |
249 |
cccttcactcat-aaacctctctggtttaaactcaagtggattttcccatagtttagggttcctattcattgaccaaaaattaacatataaaata |
342 |
Q |
| |
|
| |||||||||| ||||||||| || |||||||||||||||| ||||| ||||| | || ||||| ||||| || ||||||||| |||||||| |
|
|
| T |
38807708 |
cacttcactcataaaacctctc-ggcctaaactcaagtggattctcccacagttttgagtccctatccattgttcacaaattaacaaataaaata |
38807801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 296
Target Start/End: Complemental strand, 36735593 - 36735324
Alignment:
| Q |
30 |
agggacacacatcaaaggatgagcccttggaagggtcgtcgaagctttctcttccatgctaactgttccattaccacc---aaccttcaattcaaaacac |
126 |
Q |
| |
|
||||||||| || |||||||||||||||| ||||||| | || |||||||||||| |||| | ||||||||||| ||||||| |||||||||| |
|
|
| T |
36735593 |
agggacacaaattaaaggatgagcccttgaaagggtcaacccaggtttctcttccatattaacaatcccattaccacctttaaccttccattcaaaacat |
36735494 |
T |
|
| Q |
127 |
tgaataatagcagcaagatttgttggaacaacttgaagcgcgaacgaggtaccaggacaagctcttcttccaaatccaaatggtataaattggaaatttt |
226 |
Q |
| |
|
||||| |||||||||||||||||| | ||||| || | || || || || ||||| || |||||||||||| |||||||| || || || |||| || |
|
|
| T |
36735493 |
tgaatcatagcagcaagatttgtttgcacaacatgcaaagccaatgatgttccagggcatgctcttcttccactcccaaatggaatcaaatgaaaatgtt |
36735394 |
T |
|
| Q |
227 |
gtccccttagatcaaacttattcccttcactcataaacctctctggtttaaactcaagtggattttccca |
296 |
Q |
| |
|
| ||||| | ||| || || ||||| | |||||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
36735393 |
gacccctcacatctaaatttccaacttcattaataaacctttctggcctaaactcaagtggattatccca |
36735324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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