View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3739_low_19 (Length: 351)
Name: NF3739_low_19
Description: NF3739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3739_low_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 8 - 351
Target Start/End: Complemental strand, 24165317 - 24164974
Alignment:
| Q |
8 |
aagcaaaggaggtcaaggtttccctcggcatttatggacaaggagtccatgccaaaaatgtcccttctcaccgaagaaaagttagcgggctcaggaaaag |
107 |
Q |
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| T |
24165317 |
aagcaaaggaggtcaaggtttccctcggcatttatggacaaggagtccatgccaaaaatgtcccttctcaccgaagaaaagttagcgggctcaggaaaag |
24165218 |
T |
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| Q |
108 |
gaagatcaccgtcgcctccagttagaagatcaacatctactgatagagggtcagtcataaaaaacaaggtcaaaagcgacacaatagacaaccaaccagt |
207 |
Q |
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| T |
24165217 |
gaagatcaccgtcgcctccagttagaagatcaacatctaccgatagagggtcagtcataaaaaacaaggtcaaaagcgacacaacagacaaccaaccagt |
24165118 |
T |
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| Q |
208 |
attaaagcatccatttccagctagagtgcctgttaacaaatttcttggcacaatgccaatggctgcagcccttgaaaataatgcaagatcgcatttgaat |
307 |
Q |
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| T |
24165117 |
attaaagcatccatttccagctagagtgcctgttaacaaatttcttggcacaatgccaatggctgcagcccttgaaaataatgcaagattgcatttgaat |
24165018 |
T |
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| Q |
308 |
tcacctgagccagcaatatatgcagaggaacaattcaagcaagc |
351 |
Q |
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| T |
24165017 |
tcacctgagccagtaaaatatgaagaggaacaattcaagcaagc |
24164974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 42233035 - 42232814
Alignment:
| Q |
11 |
caaaggaggtcaaggtttccctcggcatttatggacaaggagtccatgccaaaaatgtcccttctcaccgaagaaaagttagcgggctcaggaaaaggaa |
110 |
Q |
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| T |
42233035 |
caaagaaggccaagatttccctcaacatttatggacaaggactccataccaaaaatgtctcttctgtctgaagaaaagtcagtgagcacagggaggggca |
42232936 |
T |
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| Q |
111 |
gatcaccgtcgcctccagttagaagatcaacatctactgatagagggtcagtcataaaaaacaaggtcaaaagcgacacaatagacaaccaaccagtatt |
210 |
Q |
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| T |
42232935 |
ggtcaccatcacctccaattaggagatcaatatctactgatagaggttctgtcattaaaagcaagaccaaaatcgacaatctagaaaaccaaccaatttc |
42232836 |
T |
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| Q |
211 |
aaagcatccatttccagctaga |
232 |
Q |
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| T |
42232835 |
gaagaatccatttacagctaga |
42232814 |
T |
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