View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3739_low_30 (Length: 232)

Name: NF3739_low_30
Description: NF3739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3739_low_30
NF3739_low_30
[»] chr6 (9 HSPs)
chr6 (10-211)||(33414517-33414718)
chr6 (1-137)||(31564981-31565117)
chr6 (53-211)||(33269490-33269648)
chr6 (33-211)||(33383974-33384156)
chr6 (10-211)||(33395001-33395204)
chr6 (13-167)||(33258187-33258343)
chr6 (103-211)||(33292970-33293078)
chr6 (14-110)||(33278972-33279068)
chr6 (10-107)||(33280358-33280455)
[»] chr2 (2 HSPs)
chr2 (10-161)||(17447831-17447982)
chr2 (132-211)||(17445607-17445686)
[»] scaffold0428 (3 HSPs)
scaffold0428 (13-167)||(2308-2464)
scaffold0428 (14-110)||(15185-15281)
scaffold0428 (10-107)||(13798-13895)


Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 33414718 - 33414517
Alignment:
Q  10 gctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattca 109  Q
    |||||||||||||||| |||||||||||||||| |||  ||| ||||||||||||||||||| ||||||||||||||| | || ||||||||||||||||    
T  33414718 gctgaaggaagaatcggtacatacattcacgatgcacgtattggtgttctaattgaagtgaactgtgaaacggactttgttggcagaagtgagaaattca 33414619  T
Q  110 aggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaaggaaaa 209  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| | |||||||||||||||    
T  33414618 aggagttggttgatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcccgaaactattgtgacgaaggaaaa 33414519  T
Q  210 ag 211  Q
    ||    
T  33414518 ag 33414517  T

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Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 31564981 - 31565117
Alignment:
Q  1 agacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtg 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564981 agacgagttgctgaaggaagaatcggtacatacattcacgattcacgcattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtg 31565080  T
Q  101 agaaattcaaggagtttgttcatgatcttgcaatgca 137  Q
    |||||||||||||||| ||||||||||||||||||||    
T  31565081 agaaattcaaggagttggttcatgatcttgcaatgca 31565117  T

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Target: chr6; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 53 - 211
Target Start/End: Complemental strand, 33269648 - 33269490
Alignment:
Q  53 gtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtcc 152  Q
    ||||||||||||||||||| |||||||| |||||| | || |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||    
T  33269648 gtgttctaattgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgcttgtcc 33269549  T
Q  153 acaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaaggaaaaag 211  Q
    |||||||||||||||||||||||||||||||||  |||| | |||||||||||||||||    
T  33269548 acaggttcagtttgtatctattgaagatattcccgaaactattgtgacgaaggaaaaag 33269490  T

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Target: chr6; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 33 - 211
Target Start/End: Complemental strand, 33384156 - 33383974
Alignment:
Q  33 cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgca 132  Q
    ||||||| ||||||||||  ||||||||||||||||||| ||| |||| |||||| |||| |||||||||||| | |||||||| ||| |||||||||||    
T  33384156 cattcactattcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgca 33384057  T
Q  133 atgcaagttgc----tgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaaggaaaaag 211  Q
    |||||||| ||    |||||||||| ||||||||||||||||| |||||||||||| | |||||| |||||||||||||||||    
T  33384056 atgcaagtggctgcttgcttgtccagaggttcagtttgtatctgttgaagatattcttgaaaccattgtgacgaaggaaaaag 33383974  T

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Target: chr6; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 33395204 - 33395001
Alignment:
Q  10 gctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggta--gaagtgagaaatt 107  Q
    |||||||||||||||| || ||||||| ||||| ||| |||   |||||| ||||||||||| |||||||| |||||| | || |  ||||||| | |||    
T  33395204 gctgaaggaagaatcggtaaatacattgacgatgcacgcatctatgttctgattgaagtgaactgtgaaaccgactttgttggcacagaagtgatagatt 33395105  T
Q  108 caaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaaggaa 207  Q
    ||||||||| |||  ||||||| ||||||||   ||||||||||||||||||||||||||||||||||||| ||||| | |||||| || ||||||||||    
T  33395104 caaggagttggttgctgatctttcaatgcaataggctgcttgtccacaggttcagtttgtatctattgaaggtattcttgaaaccattgcgacgaaggaa 33395005  T
Q  208 aaag 211  Q
    ||||    
T  33395004 aaag 33395001  T

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Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 167
Target Start/End: Complemental strand, 33258343 - 33258187
Alignment:
Q  13 gaaggaagaatcgctacata-cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaag 111  Q
    ||||||||||||| |||||| || || ||||||||||||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||    
T  33258343 gaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaag 33258244  T
Q  112 gagtttgttcatgatcttgcaatgcaagttgctgctt-gtccacaggttcagtttgt 167  Q
    ||||| ||| | ||||||||||||||||| |||  || |||||||||||||||||||    
T  33258243 gagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttcagtttgt 33258187  T

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Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 103 - 211
Target Start/End: Complemental strand, 33293078 - 33292970
Alignment:
Q  103 aaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacga 202  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||  ||||||| |||  |||    
T  33293078 aaattcaaggagttggttaatgatcttgcaatgcaagttgctgctattcttcaggttcagtttgtatctattgaagatattctcaaaaccattgtcgcga 33292979  T
Q  203 aggaaaaag 211  Q
    |||||||||    
T  33292978 aggaaaaag 33292970  T

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Target: chr6; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 33279068 - 33278972
Alignment:
Q  14 aaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 110  Q
    |||||||||| | |||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  33279068 aaggaagaattggtacatacattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 33278972  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 33280455 - 33280358
Alignment:
Q  10 gctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaatt 107  Q
    ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || |||||| | || ||||||||||||||    
T  33280455 gctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactgacttttttggcagaagtgagaaatt 33280358  T

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Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 17447831 - 17447982
Alignment:
Q  10 gctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattca 109  Q
    |||||||||||||||| |||||||||||||||| ||| |||  ||| |||||||||| |||| | |||||| |||||| | || ||||| |||| |||||    
T  17447831 gctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggcagaagggagagattca 17447930  T
Q  110 aggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttca 161  Q
    ||||||| ||| ||||||||||||||||||| ||||||| ||||||||||||    
T  17447931 aggagttggttgatgatcttgcaatgcaagtggctgcttttccacaggttca 17447982  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 132 - 211
Target Start/End: Original strand, 17445607 - 17445686
Alignment:
Q  132 aatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaaggaaaaag 211  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||  |||||| ||||| |||||||||||    
T  17445607 aatgcaagttgatgcttgtccacatgttcagtttgtatctattgaagatattcccgaaaccattgtgaagaaggaaaaag 17445686  T

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Target: scaffold0428 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 167
Target Start/End: Complemental strand, 2464 - 2308
Alignment:
Q  13 gaaggaagaatcgctacata-cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaag 111  Q
    ||||||||||||| |||||| || || ||||||||||||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||    
T  2464 gaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaag 2365  T
Q  112 gagtttgttcatgatcttgcaatgcaagttgctgctt-gtccacaggttcagtttgt 167  Q
    ||||| ||| | ||||||||||||||||| |||  || |||||||||||||||||||    
T  2364 gagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttcagtttgt 2308  T

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Target: scaffold0428; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 15185 - 15281
Alignment:
Q  14 aaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 110  Q
    |||||||||| | |||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  15185 aaggaagaattggtacatacattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 15281  T

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Target: scaffold0428; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 13798 - 13895
Alignment:
Q  10 gctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaatt 107  Q
    ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || |||||| | || ||||||||||||||    
T  13798 gctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactgacttttttggcagaagtgagaaatt 13895  T

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