View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3739_low_5 (Length: 604)

Name: NF3739_low_5
Description: NF3739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3739_low_5
NF3739_low_5
[»] chr8 (5 HSPs)
chr8 (18-342)||(6566811-6567133)
chr8 (22-342)||(6652264-6652582)
chr8 (22-342)||(6732664-6732982)
chr8 (430-516)||(6652128-6652214)
chr8 (430-516)||(6732528-6732614)


Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 6567133 - 6566811
Alignment:
Q  18 aaacttcaacagatcaacaactggttcatcggcaatagtattctcttgcttgaatgtcaaattggagaccatctgttcctcagtcaaaaacgaacaatca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6567133 aaacttcaacagatcaacaactggttcatcggcaatagtattctcttgcttgaatgtcagattggagaccatctgttcctcagtcaaaaacgaacaatca 6567034  T
Q  118 gatcctttcaacatattcaacaaatgcacagtactgatgtcaataaagnnnnnnnctagacttgtgtaaatcctgctaaccttaaccccggcctctgcag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||| ||||||||    
T  6567033 gatcctttcaacatattcaacaaatgcacagtactgatgtcaataaagaaaaaaactagacttgtgtaaatcctgctaaccttaaccccggactctgcag 6566934  T
Q  218 tgaatgggctatcaaaatcatgcagcaagtttatgtttccttttgttcctaagcttgcaacggccaagctccccatttcaagttgagaaacagcacggca 317  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||     
T  6566933 tgaatgggctatcaaaatcatgcagcaaatttatgtttccttttgttccgaagcttgcaactgccaagctccccatttcaagttgagaaacagcacggc- 6566835  T
Q  318 tatactgtaaccaaagcttccacag 342  Q
     ||||||||||||||||||||||||    
T  6566834 -atactgtaaccaaagcttccacag 6566811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 22 - 342
Target Start/End: Complemental strand, 6652582 - 6652264
Alignment:
Q  22 ttcaacagatcaacaactggttcatcggcaatagtattctcttgcttgaatgtcaaattggagaccatctgttcctcagtcaaaaacgaacaatcagatc 121  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||| ||||||||||||    
T  6652582 ttcaacagatcaacaactgattcatcggcaatagtattctcttgcttgaacatcaaattggagaccatctgttcctcaatcaaaaacaaacaatcagatc 6652483  T
Q  122 ctttcaacatattcaacaaatgcacagtactgatgtcaataaagnnnnnnnctagacttgtgtaaatcctgctaaccttaaccccggcctctgcagtgaa 221  Q
    ||||||||||||||||||||||| || |||||||||| ||||||       ||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  6652482 ctttcaacatattcaacaaatgcgcaatactgatgtccataaagaaaaaaactagacttgtgtaaatcctgctaaccttaactccggcttctgcagtgaa 6652383  T
Q  222 tgggctatcaaaatcatgcagcaagtttatgtttccttttgttcctaagcttgcaacggccaagctccccatttcaagttgagaaacagcacggcatata 321  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  6652382 tgggctatcaaaatcatgcagcaaatttatgtttccttttgttccgaagcttgcaacggccaagctccccatttcaagttgagaaacagcacggc--ata 6652285  T
Q  322 ctgtaaccaaagcttccacag 342  Q
    |||||||||||||||||||||    
T  6652284 ctgtaaccaaagcttccacag 6652264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 22 - 342
Target Start/End: Complemental strand, 6732982 - 6732664
Alignment:
Q  22 ttcaacagatcaacaactggttcatcggcaatagtattctcttgcttgaatgtcaaattggagaccatctgttcctcagtcaaaaacgaacaatcagatc 121  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||| ||||||||||||    
T  6732982 ttcaacagatcaacaactgattcatcggcaatagtattctcttgcttgaacatcaaattggagaccatctgttcctcaatcaaaaacaaacaatcagatc 6732883  T
Q  122 ctttcaacatattcaacaaatgcacagtactgatgtcaataaagnnnnnnnctagacttgtgtaaatcctgctaaccttaaccccggcctctgcagtgaa 221  Q
    ||||||||||||||||||||||| || |||||||||| ||||||       ||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  6732882 ctttcaacatattcaacaaatgcgcaatactgatgtccataaagaaaaaaactagacttgtgtaaatcctgctaaccttaacaccggcttctgcagtgaa 6732783  T
Q  222 tgggctatcaaaatcatgcagcaagtttatgtttccttttgttcctaagcttgcaacggccaagctccccatttcaagttgagaaacagcacggcatata 321  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||  |||    
T  6732782 tgggctatcaaaatcatgcagcaaatttatgtttccttttgttccgaagcttgcaacagccaagctccccatttcaagttgagaaacagcacggc--ata 6732685  T
Q  322 ctgtaaccaaagcttccacag 342  Q
    |||||||||||||||||||||    
T  6732684 ctgtaaccaaagcttccacag 6732664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 430 - 516
Target Start/End: Complemental strand, 6652214 - 6652128
Alignment:
Q  430 ttcttctgtttgattgattatctccctgttatttgttatgtttggcagcttttctctattcgctcttctttttggttacctttcccc 516  Q
    ||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||| |||||||||    
T  6652214 ttcttctgtttgattgattatctccctgttaattgttatgtttggttgcttttctctattcgctcttctttttggttgcctttcccc 6652128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 430 - 516
Target Start/End: Complemental strand, 6732614 - 6732528
Alignment:
Q  430 ttcttctgtttgattgattatctccctgttatttgttatgtttggcagcttttctctattcgctcttctttttggttacctttcccc 516  Q
    |||||||||||||||||||||||| |||||| |||||||||||||  |||||||||||||||||||||||||||||| |||||||||    
T  6732614 ttcttctgtttgattgattatctcactgttaattgttatgtttggttgcttttctctattcgctcttctttttggttgcctttcccc 6732528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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