View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3739_low_7 (Length: 576)

Name: NF3739_low_7
Description: NF3739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3739_low_7
NF3739_low_7
[»] chr4 (1 HSPs)
chr4 (1-558)||(52186933-52187490)
[»] chr2 (5 HSPs)
chr2 (1-532)||(38989245-38989776)
chr2 (1-251)||(43874653-43874903)
chr2 (1-416)||(43866969-43867381)
chr2 (64-251)||(43863557-43863747)
chr2 (300-404)||(43874946-43875050)
[»] chr3 (10 HSPs)
chr3 (4-436)||(777629-778058)
chr3 (67-197)||(7033644-7033774)
chr3 (70-196)||(476509-476635)
chr3 (64-117)||(7029647-7029700)
chr3 (169-257)||(5360626-5360714)
chr3 (200-267)||(481347-481414)
chr3 (205-256)||(4149988-4150039)
chr3 (390-424)||(476278-476312)
chr3 (219-256)||(5362817-5362854)
chr3 (139-188)||(25597389-25597438)
[»] chr6 (1 HSPs)
chr6 (223-266)||(7175039-7175082)


Alignment Details
Target: chr4 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 558
Target Start/End: Complemental strand, 52187490 - 52186933
Alignment:
Q  1 acttggagcatatagctcaattccaaaatagattccaacataggtctcaggaacagaatcccacataagtatacttaaattgacaagtttggcacttgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52187490 acttggagcatatagctcaattccaaaatagattccaacataggtctcaggaacagaatcccacataagtatacttaaattgacaagtttggcacttgat 52187391  T
Q  101 atgcaaagtttttgtgcgtcgagaactatacaacagtcaatgaccaaactgttcaacattttaaacgtggaaaagggctcgacacaaccatcatcacctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52187390 atgcaaagtttttgtgcgtcgagaactatacaacagtcaatgaccaaactgttcaacattttaaacgtggaaaagggctcgacacaaccatcatcacctc 52187291  T
Q  201 gacaaaagccaaagtactttagagacaagttggttaatgctggcaaattcagagaatttcgaaatatcggtttatgacttaaaattgcattgtatatgaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52187290 gacaaaagccaaagtactttagagacaagttggttaatgctggcaaattcagagaatttcgaaatatcggtttatgacttaaaattgcattgtatatgaa 52187191  T
Q  301 accagaatgattaagagacgttaaagtgcgacatgaaaagatgcaagaaggaaagtcttcaatatgacaagtgtaatcaagtattaagtgttggacattg 400  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52187190 accagaaagattaagagacgttaaagtgcgacatgaaaagatgcaagaaggaaagtcttcaatatgacaagtgtaatcaagtattaagtgttggacattg 52187091  T
Q  401 tgtgaaacagtgtattctatgatccttgggagtagggtaggcttcatgtactgacgacgatacaaatcaagagtgtggatggcggttgagccatcacgaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52187090 tgtgaaacagtgtattctatgatccttgggagtagggtaggcttcatgtactgacgacgatacaaatcaagagtgtggatggcggttgagccatcacgaa 52186991  T
Q  501 gagagagaatctgagacacaaattcatcaaacnnnnnnnccggtcctaaagtatgaag 558  Q
    ||||||||||||||||||||||||||||||||       |||| ||||||||||||||    
T  52186990 gagagagaatctgagacacaaattcatcaaactttttttccggacctaaagtatgaag 52186933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Complemental strand, 38989776 - 38989245
Alignment:
Q  1 acttggagcatatagctcaattccaaaatagattccaacataggtctcaggaacagaatcccacataagtatacttaaattgacaagtttggcacttgat 100  Q
    |||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||    
T  38989776 acttggagcatatagctcgattccaaaatagattccaatatatgtctcaggaacagaagcccacataagtatacttaaattgacaagcttggtacttgat 38989677  T
Q  101 atgcaaagtttttgtgcgtcgagaactatacaacagtcaatgaccaaactgttcaacattttaaacgtggaaaagggctcgacacaaccatcatcacctc 200  Q
    |||||||| ||||||||||| |||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||| |||||||||| ||||| ||    
T  38989676 atgcaaagattttgtgcgtccagaactatacaacagtcaatgatcaaactattcaacattttaaatgtggaaaagggctcaacacaaccattatcacttc 38989577  T
Q  201 gacaaaagccaaagtactttagagacaagttggttaatgctggcaaattcagagaatttcgaaatatcggtttatgacttaaaattgcattgtatatgaa 300  Q
    ||  |||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||  |||||||||   | || || |||||||| |||    
T  38989576 gagcaaaggcaaagtactttaaagacaagttggttaatgatggcaaattcagagaatttcgaaatactggtttatgatggacaaatgtattgtataagaa 38989477  T
Q  301 accagaatgattaagagacgttaaagtgcgacatgaaaagatgcaagaaggaaagtcttcaatatgacaagtgtaatcaagtattaagtgttggacattg 400  Q
    ||||||| ||||||||||| |||||||| |||||||||||| |||||| ||||| | ||||||||||||||||||||||| | ||||||||||||| |||    
T  38989476 accagaaagattaagagactttaaagtgtgacatgaaaagaggcaagacggaaaattttcaatatgacaagtgtaatcaattcttaagtgttggacgttg 38989377  T
Q  401 tgtgaaacagtgtattctatgatccttgggagtagggtaggcttcatgtactgacgacgatacaaatcaagagtgtggatggcggttgagccatcacgaa 500  Q
    ||||||||||  |||||||||||| |  |||||||| || |||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38989376 tgtgaaacagcatattctatgatcttccggagtaggctatgcttcatggaatgacgacgatacaaatcaagagtgtggatggcggttgagccatcgcgaa 38989277  T
Q  501 gagagagaatctgagacacaaattcatcaaac 532  Q
    |||| | |||| |||||||||| |||||||||    
T  38989276 gagaaaaaatccgagacacaaactcatcaaac 38989245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 43874653 - 43874903
Alignment:
Q  1 acttggagcatatagctcaattccaaaatagattccaacataggtctcaggaacagaatcccacataagtatacttaaattgacaagtttggcacttgat 100  Q
    |||||||||||||||||| | |||||||||| |||| | || |||| || |  |  ||||   |||||||||| ||||||||||||| |||| |||||||    
T  43874653 acttggagcatatagctcgagtccaaaataggttccgatattggtcgcaaggtcgcaatcatccataagtatagttaaattgacaagcttggtacttgat 43874752  T
Q  101 atgcaaagtttttgtgcgtcgagaactatacaacagtcaatgaccaaactgttcaacattttaaacgtggaaaagggctcgacacaaccatcatcacctc 200  Q
    |||||||| |||||||| ||  |||||| ||||| |||||||| |||||  |||||||| ||||| || ||||||||||||||||| |||||||||| ||    
T  43874753 atgcaaaggttttgtgcatcctgaactaaacaactgtcaatgatcaaacgattcaacatgttaaatgttgaaaagggctcgacacagccatcatcacttc 43874852  T
Q  201 gacaaaagccaaagtactttagagacaagttggttaatgctggcaaattca 251  Q
     |   ||| ||| |||||||| ||||||| ||||||||| |||||||||||    
T  43874853 aatgcaaggcaatgtactttaaagacaagctggttaatgttggcaaattca 43874903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 43866969 - 43867381
Alignment:
Q  1 acttggagcatatagctcaattccaaaatagattccaacataggtctcaggaacagaatcccacataagtatacttaaattgacaagtttggcacttgat 100  Q
    |||||||||||| ||||| | |||||||||| |||| | |  ||||| |||  || ||||   ||||| |||| ||||||||||||| |||| |||||||    
T  43866969 acttggagcatacagctcgagtccaaaataggttccgataatggtcttaggctcacaatcatgcataattatagttaaattgacaagcttggtacttgat 43867068  T
Q  101 atgcaaagtttttgtgcgtcgagaactatacaacagtcaatgaccaaactgttcaacattttaaacgtggaaaagggct---cgacacaaccatcatcac 197  Q
    |||||||| |||||||| ||  |||||||||||| |||||||| |||||  |||||||| ||||| || ||||||||||   ||||||||||| ||||||    
T  43867069 atgcaaaggttttgtgcatcctgaactatacaactgtcaatgatcaaacgattcaacatgttaaatgtcgaaaagggctcgacgacacaaccagcatcac 43867168  T
Q  198 ctcgacaaaagccaaagtactttagagacaagttggttaatgctggcaaattcagagaatttcgaaatatcggtttatgacttaaaattgcattgtatat 297  Q
      |||  ||||  ||||||||||| ||||||| ||||||||||||||| ||| | |   ||| ||||||| ||| | ||||  || | |  || ||        
T  43867169 tgcgatgaaaggaaaagtactttaaagacaagctggttaatgctggcagatttaaattttttggaaatattggtatctgaccaaacaatatatcgt---- 43867264  T
Q  298 gaaaccagaatgattaagagacgttaaagtgcgacatgaaaagatgcaagaaggaaagtcttcaatatgacaagtgtaatcaagtattaagtgttggaca 397  Q
      |||||||| |||||||||||||||| ||| |||| ||||||| |||||| ||||||   |||||| |||||| | |||  | || |||||||||||||    
T  43867265 --aaccagaaagattaagagacgttaatgtgtgacacgaaaagaagcaagagggaaagaggtcaatacgacaagggaaattcattagtaagtgttggaca 43867362  T
Q  398 ttgtgtgaaacagtgtatt 416  Q
    ||||| |||| || |||||    
T  43867363 ttgtgggaaatagcgtatt 43867381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 64 - 251
Target Start/End: Original strand, 43863557 - 43863747
Alignment:
Q  64 cataagtatacttaaattgacaagtttggcacttgatatgcaaagtttttgtgcgtcgagaactatacaacagtcaatgaccaaactgttcaacatttta 163  Q
    |||||||||| |||||||||||||  ||| ||||||||||||||| |||||||| ||  |||||||||||| |||||||| |||||  | |||||| |||    
T  43863557 cataagtatagttaaattgacaagcctggtacttgatatgcaaaggttttgtgcatcctgaactatacaactgtcaatgatcaaacgatccaacatgtta 43863656  T
Q  164 aacgtggaaaagggctcgac---acaaccatcatcacctcgacaaaagccaaagtactttagagacaagttggttaatgctggcaaattca 251  Q
     | || || |||||||||||   ||||||||||||||  |||  ||||  ||||||||||| ||||||| |||||||||||||||||||||    
T  43863657 tatgtcgagaagggctcgacgagacaaccatcatcactgcgatgaaaggaaaagtactttaaagacaaggtggttaatgctggcaaattca 43863747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 404
Target Start/End: Original strand, 43874946 - 43875050
Alignment:
Q  300 aaccagaatgattaagagacgttaaagtgcgacatgaaaagatgcaagaaggaaagtcttcaatatgacaagtgtaatcaagtattaagtgttggacatt 399  Q
    |||||||| |||||||||| ||||| ||| |||||||||||| |||||| ||||||   ||||||  ||||| |  ||| | || ||||||||||| |||    
T  43874946 aaccagaaagattaagagaagttaatgtgtgacatgaaaagaagcaagagggaaagaggtcaatacaacaagggatatccattagtaagtgttggatatt 43875045  T
Q  400 gtgtg 404  Q
    |||||    
T  43875046 gtgtg 43875050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 4 - 436
Target Start/End: Original strand, 777629 - 778058
Alignment:
Q  4 tggagcatatagctcaattccaaaatagattccaacataggtctcaggaacagaatcccacataagtatacttaaattgacaagtttggcacttgatatg 103  Q
    ||||||||||||||| | | |||||||  |||| | |||||||||| || || |||| |||||||| ||| | ||| | |||||||||| ||||||||||    
T  777629 tggagcatatagctcgagttcaaaataagttccgatataggtctcaagatcacaatcacacataaggatagtaaaactaacaagtttggtacttgatatg 777728  T
Q  104 caaagtttttgtgcgtcgagaactatacaacagtcaatgaccaaactgttcaacattttaaacgtggaaaagggctcgacacaacc---atcatcacctc 200  Q
    ||||| |||||||| || | |||||||||||| ||||||| |||||| |||||||||||||| || ||||| |||||||||||| |   ||||||||| |    
T  777729 caaaggttttgtgcatccataactatacaacaatcaatgatcaaactattcaacattttaaatgttgaaaatggctcgacacaaacattatcatcaccgc 777828  T
Q  201 gacaaaagccaaagtactttagagacaagttggttaatgctggcaaattcagagaatttcgaaatatcggtttatgacttaaaattgcattgtatatgaa 300  Q
    |   |||| |||| ||||| ||||||||| | ||||||||||| ||||||| | ||||| |||||||  |||| ||||  ||     || | |||  |||    
T  777829 gctgaaaggcaaaatacttcagagacaagcttgttaatgctggtaaattcaaaaaatttggaaatatgagtttgtgaccaaa-----caatatat-ggaa 777922  T
Q  301 accagaatgattaagagacgttaaagtgcgacatgaaaagatgcaagaaggaaagtcttcaatatgacaagtgtaatcaagtattaagtgttggacattg 400  Q
    ||||||| |||||||||||||||||||  |||||||||||| ||| || ||||| |  | ||||| ||| | | |||| | ||| ||||| |||||||||    
T  777923 accagaaagattaagagacgttaaagtttgacatgaaaagaagcatgatggaaaatgattaatatcacaggggaaatccattatcaagtgctggacattg 778022  T
Q  401 tgtgaaacagtgtattctatgatccttgggagtagg 436  Q
    |||||||||  |||||  || |||||| ||||||||    
T  778023 tgtgaaacaacgtatttaataatcctttggagtagg 778058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 67 - 197
Target Start/End: Complemental strand, 7033774 - 7033644
Alignment:
Q  67 aagtatacttaaattgacaagtttggcacttgatatgcaaagtttttgtgcgtcgagaactatacaacagtcaatgaccaaactgttcaacattttaaac 166  Q
    ||||||| ||||| | ||||| |||| ||||||||||||||| |||||||| ||   ||| |||||||  ||||||| |||||| || |||||||||||     
T  7033774 aagtatagttaaactaacaagcttgggacttgatatgcaaaggttttgtgcatcacaaaccatacaactatcaatgatcaaactatttaacattttaaat 7033675  T
Q  167 gtggaaaagggctcgacacaaccatcatcac 197  Q
     |||||||||||||||||| |||||||||||    
T  7033674 ttggaaaagggctcgacacgaccatcatcac 7033644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 196
Target Start/End: Complemental strand, 476635 - 476509
Alignment:
Q  70 tatacttaaattgacaagtttggcacttgatatgcaaagtttttgtgcgtcgagaactatacaacagtcaatgaccaaactgttcaacattttaaacgtg 169  Q
    |||| ||||||||| ||| |||| |||||| |||| ||| |||||||| || |||| || |||  ||||||||| |||| | |||||||| ||||| |||    
T  476635 tatagttaaattgagaagcttggtacttgaaatgcgaaggttttgtgcatccagaattacacataagtcaatgatcaaagtattcaacatgttaaatgtg 476536  T
Q  170 gaaaagggctcgacacaaccatcatca 196  Q
    |||||||| ||||| ||||||||||||    
T  476535 gaaaaggggtcgacgcaaccatcatca 476509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 7029700 - 7029647
Alignment:
Q  64 cataagtatacttaaattgacaagtttggcacttgatatgcaaagtttttgtgc 117  Q
    |||||||| ||||||||| ||||| |||| ||||||||||||||| ||||||||    
T  7029700 cataagtaaacttaaattaacaagcttgggacttgatatgcaaaggttttgtgc 7029647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 5360626 - 5360714
Alignment:
Q  169 ggaaaagggctcgacacaaccatcatcacctcgacaaaagccaaagtactttagagacaagttggttaatgctggcaaattcagagaat 257  Q
    ||||||||| |||||| |||||||||||   ||| ||||| ||| |  ||||||||||||  ||||||||||||| ||||| |||||||    
T  5360626 ggaaaaggggtcgacaaaaccatcatcattgcgataaaaggcaaggctctttagagacaaagtggttaatgctgggaaattgagagaat 5360714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 267
Target Start/End: Complemental strand, 481414 - 481347
Alignment:
Q  200 cgacaaaagccaaagtactttagagacaagttggttaatgctggcaaattcagagaatttcgaaatat 267  Q
    |||| |||| ||| |||||||||||||||  ||||||||||||| ||||| ||| ||||| |||||||    
T  481414 cgacgaaaggcaacgtactttagagacaaagtggttaatgctgggaaattgagaaaatttggaaatat 481347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 4150039 - 4149988
Alignment:
Q  205 aaagccaaagtactttagagacaagttggttaatgctggcaaattcagagaa 256  Q
    |||| ||||||| |||||| ||||| |||||||||| |||||||||||||||    
T  4150039 aaaggcaaagtattttagacacaagctggttaatgcaggcaaattcagagaa 4149988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 424
Target Start/End: Complemental strand, 476312 - 476278
Alignment:
Q  390 gttggacattgtgtgaaacagtgtattctatgatc 424  Q
    |||||||||||||||||| ||||||||||||||||    
T  476312 gttggacattgtgtgaaaaagtgtattctatgatc 476278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 256
Target Start/End: Complemental strand, 5362854 - 5362817
Alignment:
Q  219 ttagagacaagttggttaatgctggcaaattcagagaa 256  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  5362854 ttagagtcaaggtggttaatgctggcaaattcagagaa 5362817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 25597438 - 25597389
Alignment:
Q  139 aatgaccaaactgttcaacattttaaacgtggaaaagggctcgacacaac 188  Q
    |||||||||||| |||||||||||||| | | |||||||||| |||||||    
T  25597438 aatgaccaaactattcaacattttaaaggcgaaaaagggctcaacacaac 25597389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 266
Target Start/End: Original strand, 7175039 - 7175082
Alignment:
Q  223 agacaagttggttaatgctggcaaattcagagaatttcgaaata 266  Q
    ||||||||||||||| ||||| ||||||||||||||| ||||||    
T  7175039 agacaagttggttaaagctggaaaattcagagaatttggaaata 7175082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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