View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3739_low_8 (Length: 549)
Name: NF3739_low_8
Description: NF3739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3739_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 18 - 531
Target Start/End: Complemental strand, 52087703 - 52087202
Alignment:
| Q |
18 |
agaagacgttccacaatcagcgattgattccatggtgaagcaagtgaattcccttatctctcttgaagagccacttcacttgactatgggtccgttggta |
117 |
Q |
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| T |
52087703 |
agaagacgttccacaatcagcgattgattccatggtgaagcaagtgaattcccttatctctcttgaagagccacttcacttaactatgggtccgttggta |
52087604 |
T |
|
| Q |
118 |
agtattcaatcctccaattccatttcatctttcaatttcactcacatgatccatagtagattcagatccaaggaagatctccatgcctatgcagtgcacc |
217 |
Q |
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| T |
52087603 |
agtattcaatcctccaattccatttcatctttcaatttcactcacatgatccatagtagattcagatccaaggaagatctccatgcctatgcagtgcacc |
52087504 |
T |
|
| Q |
218 |
ctacacacttggcagtcatcaaagataacaagcctatagttgatgaaaccatggctcttaattgggtcaccgaggttcacgataacgacttggttctaca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52087503 |
ctacacacttggcagtcatcaaagataacaagcctatagttgatgaaaccatggctcttaattgggtcaccgaggttcacgataacgacttggttctaca |
52087404 |
T |
|
| Q |
318 |
acatggatctgctatgcaagttttgttcttcaagttgaaggagggtttgggagaagaagttaaagatgaggtgttgaagggtataagtggaattcaacat |
417 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52087403 |
acatggatctgctatgcaagttgtgttcttcaagttgaaggagggtttgggagaagaagttaaagatgaggtgttgaagggtataagtggaattcaaca- |
52087305 |
T |
|
| Q |
418 |
gaaaaagctgttcagtttaattgtggggaaaatttctcttctggtagagctaaagggttctctattggttccctttcagttttttcaagtttaagggaat |
517 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
52087304 |
-----------tcagtttaattgtggggaaaatttctctcctggtagagctaaagggttctctattggttccctttcggtttttccaagtttaagggaat |
52087216 |
T |
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| Q |
518 |
tgcatgaagttgat |
531 |
Q |
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|||||||||||||| |
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| T |
52087215 |
tgcatgaagttgat |
52087202 |
T |
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