View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3740_high_12 (Length: 264)
Name: NF3740_high_12
Description: NF3740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3740_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 9336584 - 9336818
Alignment:
| Q |
18 |
cacagtctttttgagaaaatgacctaacagattcaaagttctaactccacccaaatcaccgttaaaagcaaaaaccctacctaccaaaaactgagacatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9336584 |
cacagtctttttgagaaaatgacctaccagattcaaagttctaactccacccaaatcaccgttaaaagcaaaaaccctacctaccaaaaactgaaacatt |
9336683 |
T |
|
| Q |
118 |
aaccgaattcaaggatgcgaagatccttaggatcggtgatggatttacagatagaagccaaatcgatattcacttcacttcgcacctcccggttcgaatg |
217 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
9336684 |
aaccgaattcaaggatgcgagggtccttaggatcgatgatggatttacagatagaagccaaatcgatattcgcttcacttcgcacctcccagttcgaatg |
9336783 |
T |
|
| Q |
218 |
aaaacgactatccttccattctgataacattattc |
252 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
9336784 |
aaaaagactatccttccattctgataacattattc |
9336818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 8209356 - 8209426
Alignment:
| Q |
117 |
taaccgaattcaaggatgcgaagatccttaggatcggtgatggatttacagatagaagccaaatcgatatt |
187 |
Q |
| |
|
|||||||||| | | |||||| |||| ||||||||||||||||| | | ||| |||||| ||||||||||| |
|
|
| T |
8209356 |
taaccgaattgacgaatgcgaggatcgttaggatcggtgatggagtgaaagagagaagctaaatcgatatt |
8209426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 202
Target Start/End: Original strand, 42365183 - 42365268
Alignment:
| Q |
117 |
taaccgaattcaaggatgcgaagatccttaggatcggtgatggatttacagatagaagccaaatcgatattcacttcacttcgcac |
202 |
Q |
| |
|
|||||||||||| |||||||| | || |||||||||||||| || | ||||| |||||||| ||| ||||| ||||| ||||||| |
|
|
| T |
42365183 |
taaccgaattcacggatgcgagggtctttaggatcggtgattgagtcacagagagaagccagatcaatattggcttcatttcgcac |
42365268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University