View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3740_high_3 (Length: 431)
Name: NF3740_high_3
Description: NF3740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3740_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 333
Target Start/End: Original strand, 9398911 - 9399253
Alignment:
| Q |
11 |
gaacctgtgggtgtagacgaaatgtttcttttattatggcttgaatataaggaagatttggtccgtcagattcatctactagtctgtttttccctactac |
110 |
Q |
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| T |
9398911 |
gaaccggtgggtgtagacgaaatgtttcttttattatggcttgaatataaggaagatttggtccgtcagattcatctactagtctgtttttccctactac |
9399010 |
T |
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| Q |
111 |
attgtctatttcttcacgagctttttgtaacaatgaagggttgttcattagctcaactaatgcccattctgttgaaattgatgttgtgtctgttcctgct |
210 |
Q |
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| T |
9399011 |
attgtctatttcttcacgagctttttgtaacaatgaagggttgttcattagctcaactaatgcccattctgttgaaattgatgttgtgtctgttcctgct |
9399110 |
T |
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| Q |
211 |
gtgaagaaatcctgtgaaacatataaaattaaaagaattaattaatca------tttacttaggttt-------------gggat-aatgcataattata |
290 |
Q |
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| T |
9399111 |
gtaaagaaatcctgtgaaacatatgaaattaaaagaattaattaatcattaacttttacttaggtttctcttaaatagtatggataaatgcataattata |
9399210 |
T |
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| Q |
291 |
ctccttcccgtcaggattattggcaaaaatgattaacttcaca |
333 |
Q |
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| T |
9399211 |
ctcctttcggtcaggattattgacaaaaatgattaacttcaca |
9399253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 9381492 - 9381720
Alignment:
| Q |
17 |
gtgggtgtagacgaaatgtttcttttattatggcttgaatataaggaagatttggtccgtcagattcatctactagtctgtttttccctactacattgtc |
116 |
Q |
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| T |
9381492 |
gtgggtgtagacgaaatgtttcttttattatggcttgaatataaggaagatttggaccgtcagattcatctactagtctatttttccctactatattgtc |
9381591 |
T |
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| Q |
117 |
tatttcttcacgagctttttgtaacaatgaagggttgttcattagctcaactaatgcccattctgttgaaattgatgttgtgtctgttcctgctgtgaag |
216 |
Q |
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| T |
9381592 |
tatttcttcacgagctttttgtaataatgaagggttgttcattagctcaactaatgcccattctgttgaaattgatgttgtgtctgttcctgctgtgaaa |
9381691 |
T |
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| Q |
217 |
aaatcctgtgaaacatataaaattaaaag |
245 |
Q |
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| T |
9381692 |
aaatcctgtgaaacatacgaaattaaaag |
9381720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 23244478 - 23244271
Alignment:
| Q |
17 |
gtgggtgtagacgaaatgtttcttttattatggcttgaatataaggaagatttggtccgtcagattcatctactagtctgtttttccctactacattgtc |
116 |
Q |
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||||||| ||||||||||||||| |||| || ||||| | ||| || | ||||| ||| ||||| || ||| ||||||||| ||||||| ||||| |
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| T |
23244478 |
gtgggtgaagacgaaatgtttctcttatgattgcttgtagatatggcatatttgaaatgtcggattcttcaactgttctgtttttgcctactatgttgtc |
23244379 |
T |
|
| Q |
117 |
tatttcttcacgagctttttgtaacaatgaagggttgttc-attagctcaactaatgcccattctgttgaaattgatgttgtgtctgttcctgctgtgaa |
215 |
Q |
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|||||||||||||||||||| | || || ||||| || || || || |||||||||||||||||||| |||| |||||| ||||||||||||||||| |
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| T |
23244378 |
gatttcttcacgagctttttggagtaaagatgggtttttttatgagttctactaatgcccattctgttgatattgctgttgtatctgttcctgctgtgaa |
23244279 |
T |
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| Q |
216 |
gaaatcct |
223 |
Q |
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|||||||| |
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| T |
23244278 |
gaaatcct |
23244271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 23223331 - 23223371
Alignment:
| Q |
31 |
aatgtttcttttattatggcttgaatataaggaagatttgg |
71 |
Q |
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| T |
23223331 |
aatgtttcttttataatggcttgtatataaggaaggtttgg |
23223371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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