View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3740_high_4 (Length: 407)

Name: NF3740_high_4
Description: NF3740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3740_high_4
NF3740_high_4
[»] chr5 (1 HSPs)
chr5 (7-391)||(28478083-28478466)
[»] chr8 (3 HSPs)
chr8 (162-230)||(11497557-11497625)
chr8 (85-121)||(31562687-31562723)
chr8 (76-131)||(44961981-44962036)
[»] chr2 (5 HSPs)
chr2 (268-345)||(29929953-29930030)
chr2 (167-229)||(42467773-42467835)
chr2 (65-123)||(42467873-42467931)
chr2 (271-340)||(30942506-30942575)
chr2 (268-312)||(709481-709525)
[»] chr3 (5 HSPs)
chr3 (65-123)||(21144016-21144074)
chr3 (267-340)||(21143750-21143823)
chr3 (92-123)||(32783413-32783444)
chr3 (87-131)||(3041584-3041628)
chr3 (87-123)||(46560528-46560564)
[»] chr1 (5 HSPs)
chr1 (92-182)||(12093848-12093938)
chr1 (70-123)||(18565104-18565157)
chr1 (71-122)||(28303401-28303451)
chr1 (65-123)||(460883-460941)
chr1 (81-123)||(19809072-19809114)
[»] chr6 (2 HSPs)
chr6 (68-133)||(28089118-28089183)
chr6 (270-318)||(25202664-25202712)
[»] chr4 (3 HSPs)
chr4 (65-123)||(5078945-5079003)
chr4 (87-133)||(40829696-40829742)
chr4 (85-117)||(42813531-42813563)


Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 7 - 391
Target Start/End: Complemental strand, 28478466 - 28478083
Alignment:
Q  7 taagattagtggttacaacttaaaatatataaaatcaatttttattataataatttgttggttaatgcagtttgaatacatggttaattatgtttagtgg 106  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28478466 taagattagtggttacaaattaaaatatataaaatcaatttttattataataatttgttggttaatgcagattgaatacatggttaattatgtttagtgg 28478367  T
Q  107 atgattaatgaatataattaggtgtagtaattaattaatcataaagttatgccaattaacaatgattttgaacatcgttaaccaagattttcaggtttac 206  Q
    ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  28478366 atggttaatgaatataattaggtgtcgtaattaattaatcataaagttatgccaattaacaatgattttgaacatcgttaaccaagattttcaggtgtac 28478267  T
Q  207 atttgatcacaaattgtggttaatgggtaacatgtacacaaaattaaacacaggaaagttatggttaatgacgttgaaaatcgtgattaattacgtttgg 306  Q
    |||||||| ||||||||||||| ||| || ||||||  |||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||| | || |    
T  28478266 atttgatctcaaattgtggttagtggatatcatgtatgcaaaattaaacacatgaaagttatggttaatgatgtttaaaatcatgattagttatg-ttcg 28478168  T
Q  307 tggatgattaatgaattttggcaccttgttatatccatataaattgttgtcaaattcatgttaagaatataatttctctatatgg 391  Q
    |||||| |||||||||| || |||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||    
T  28478167 tggatggttaatgaattgtgacaccttgttatatccatataaattgttgtcaaattcctgttgagaatataatttccctatatgg 28478083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 11497557 - 11497625
Alignment:
Q  162 ttaacaatgattttgaacatcgttaaccaagattttcaggtttacatttgatcacaaattgtggttaat 230  Q
    ||||| ||||||||||||||| ||||||| ||||||||||| || |||||| |||||| ||||||||||    
T  11497557 ttaaccatgattttgaacatcattaaccacgattttcaggtgtaaatttgaacacaaactgtggttaat 11497625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 31562687 - 31562723
Alignment:
Q  85 catggttaattatgtttagtggatgattaatgaatat 121  Q
    |||||||||||||||||||| ||||||||||||||||    
T  31562687 catggttaattatgtttagtagatgattaatgaatat 31562723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 44962036 - 44961981
Alignment:
Q  76 gtttgaatacatggttaattatgtttagtggatgattaatgaatataattaggtgt 131  Q
    |||||||||| |||||||||| ||| ||||||||  ||||||||||||| ||||||    
T  44962036 gtttgaatacgtggttaattacgttcagtggatggataatgaatataataaggtgt 44961981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 345
Target Start/End: Original strand, 29929953 - 29930030
Alignment:
Q  268 tggttaatgacgttgaaaatcgtgattaattacgtttggtggatgattaatgaattttggcaccttgttatatccata 345  Q
    |||||||||| ||| ||  ||||| |||||||||||  ||||||| ||||||||||||| ||||||||||||| ||||    
T  29929953 tggttaatgatgttcaatgtcgtggttaattacgttcagtggatggttaatgaattttgacaccttgttatattcata 29930030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 42467835 - 42467773
Alignment:
Q  167 aatgattttgaacatcgttaaccaagattttcaggtttacatttgatcacaaattgtggttaa 229  Q
    ||||||||||||  || ||||||| |||||||| ||||| |||||| ||||||||||||||||    
T  42467835 aatgattttgaatgtcattaaccatgattttcatgtttatatttgaacacaaattgtggttaa 42467773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 42467931 - 42467873
Alignment:
Q  65 tggttaatgcagtttgaatacatggttaattatgtttagtggatgattaatgaatataa 123  Q
    ||||||||||||||  ||||  ||||||||||||||||||||||| |||| || |||||    
T  42467931 tggttaatgcagttcaaatatgtggttaattatgtttagtggatgcttaacgagtataa 42467873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 340
Target Start/End: Complemental strand, 30942575 - 30942506
Alignment:
Q  271 ttaatgacgttgaaaatcgtgattaattacgtttggtggatgattaatgaattttggcaccttgttatat 340  Q
    ||||||||||| ||||| ||| |||||||||||   | ||||||| || |||| ||||||||||||||||    
T  30942575 ttaatgacgtttaaaattgtggttaattacgttcattcgatgatttatcaattgtggcaccttgttatat 30942506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 709525 - 709481
Alignment:
Q  268 tggttaatgacgttgaaaatcgtgattaattacgtttggtggatg 312  Q
    |||||||||||||| |||||||||||||||| | ||| |||||||    
T  709525 tggttaatgacgttcaaaatcgtgattaattgcttttagtggatg 709481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 21144074 - 21144016
Alignment:
Q  65 tggttaatgcagtttgaatacatggttaattatgtttagtggatgattaatgaatataa 123  Q
    ||||||||||| ||  |||||||||||||||||||| ||| |||| |||||||||||||    
T  21144074 tggttaatgcaattcaaatacatggttaattatgttaagtagatggttaatgaatataa 21144016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 21143823 - 21143750
Alignment:
Q  267 atggttaatgacgttgaaaatcgtgattaattacgtttggtggatgattaatgaattttggcaccttgttatat 340  Q
    ||||||||||| ||| ||||| ||| |||||||||||  ||||||||||||||| || || ||| |||||||||    
T  21143823 atggttaatgaagttcaaaattgtggttaattacgttcagtggatgattaatgagttgtgacactttgttatat 21143750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 123
Target Start/End: Complemental strand, 32783444 - 32783413
Alignment:
Q  92 aattatgtttagtggatgattaatgaatataa 123  Q
    ||||||||||||||||||||||||||||||||    
T  32783444 aattatgtttagtggatgattaatgaatataa 32783413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 3041628 - 3041584
Alignment:
Q  87 tggttaattatgtttagtggatgattaatgaatataattaggtgt 131  Q
    ||||||||||  ||||||||||||||||| |||||||| ||||||    
T  3041628 tggttaattacatttagtggatgattaataaatataataaggtgt 3041584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 46560528 - 46560564
Alignment:
Q  87 tggttaattatgtttagtggatgattaatgaatataa 123  Q
    |||||||||||||| |||||||| |||||||||||||    
T  46560528 tggttaattatgttaagtggatggttaatgaatataa 46560564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 182
Target Start/End: Complemental strand, 12093938 - 12093848
Alignment:
Q  92 aattatgtttagtggatgattaatgaatataattaggtgtagtaattaattaatcataaagttatgccaattaacaatgattttgaacatc 182  Q
    ||||| |||||||||||||||||| |||||||| |||||||| || ||||||| ||| |||| |   ||||| || |||||||| ||||||    
T  12093938 aattacgtttagtggatgattaattaatataataaggtgtagcaactaattaaccatcaagtgaatacaattgaccatgattttaaacatc 12093848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 18565104 - 18565157
Alignment:
Q  70 aatgcagtttgaatacatggttaattatgtttagtggatgattaatgaatataa 123  Q
    |||||| ||| |||| |||||| |||||||||||| ||||||||||||||||||    
T  18565104 aatgcaatttaaatatatggttcattatgtttagtagatgattaatgaatataa 18565157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 28303451 - 28303401
Alignment:
Q  71 atgcagtttgaatacatggttaattatgtttagtggatgattaatgaatata 122  Q
    ||||||||| ||||||||||||||||||||| || |||| ||||||||||||    
T  28303451 atgcagtttaaatacatggttaattatgttttgtagatg-ttaatgaatata 28303401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 460941 - 460883
Alignment:
Q  65 tggttaatgcagtttgaatacatggttaattatgtttagtggatgattaatgaatataa 123  Q
    |||||||| || ||| |||| |||  |||||||||||||| ||||||||||||||||||    
T  460941 tggttaatacaatttaaatatatgactaattatgtttagtagatgattaatgaatataa 460883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 19809114 - 19809072
Alignment:
Q  81 aatacatggttaattatgtttagtggatgattaatgaatataa 123  Q
    ||||||||||||||||  |||||| ||||||||||||||||||    
T  19809114 aatacatggttaattacatttagtagatgattaatgaatataa 19809072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 28089118 - 28089183
Alignment:
Q  68 ttaatgcagtttgaatacatggttaattatgtttagtggatgattaatgaatataattaggtgtag 133  Q
    |||| ||||||  |||||||||||||||||||||||| |||| |||||| ||||||  ||||||||    
T  28089118 ttaacgcagttcaaatacatggttaattatgtttagtagatggttaatggatataacaaggtgtag 28089183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 25202712 - 25202664
Alignment:
Q  270 gttaatgacgttgaaaatcgtgattaattacgtttggtggatgattaat 318  Q
    ||||| |||||| |||| |||| ||||||||||||||| ||||||||||    
T  25202712 gttaaagacgttcaaaaacgtggttaattacgtttggttgatgattaat 25202664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 5078945 - 5079003
Alignment:
Q  65 tggttaatgcagtttgaatacatggttaattatgtttagtggatgattaatgaatataa 123  Q
    ||||||||||||||  |||| |||||||||||  |||||| |||||||| |||||||||    
T  5078945 tggttaatgcagttcaaatatatggttaattacatttagtagatgattagtgaatataa 5079003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 40829742 - 40829696
Alignment:
Q  87 tggttaattatgtttagtggatgattaatgaatataattaggtgtag 133  Q
    |||||||||| ||||||| ||||||||||||||||||  ||||||||    
T  40829742 tggttaattacgtttagttgatgattaatgaatataacaaggtgtag 40829696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 42813563 - 42813531
Alignment:
Q  85 catggttaattatgtttagtggatgattaatga 117  Q
    ||||||||||||||||||||||||||| |||||    
T  42813563 catggttaattatgtttagtggatgatcaatga 42813531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University