View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3740_high_6 (Length: 354)
Name: NF3740_high_6
Description: NF3740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3740_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 20 - 346
Target Start/End: Original strand, 32417538 - 32417864
Alignment:
| Q |
20 |
cttacacaatcatcaagtgtctgcagaggaaaaataatattattcattgcctcttttggcttataaacttattttcaaatcaaccataaaactatgaaaa |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32417538 |
cttacacaatcatcaagtgtctgcagaggaaaaataatattattcattgcctcttttggcttataaacttattttcaaatcaaccataaaattatgaaaa |
32417637 |
T |
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| Q |
120 |
gaattagagcttgccttactcgaatttcgccgcgaaacaggagaatcattcggagtagtgattgtttttgctttctcagtttcaagatcattcatcatgt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32417638 |
gaattagagcttgccttactcgaatttcgccgcgaaacaggagaatcattcggagtagtgattgtttttgctttctcagtttcaagaccattcatcatgt |
32417737 |
T |
|
| Q |
220 |
tgattatgctcctaactccttcataacatgccccacatatcgtattccttggaggccttaatattaatggcatagttgtgcacacacaacaatccatttt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32417738 |
tgattatgctcctaactccttcataacatgccccacatattgtattccttggaggccttaatattaatggcatagttgtgcacacacaacaatccatttt |
32417837 |
T |
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| Q |
320 |
tgcttcttagaatttctctcctatgct |
346 |
Q |
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||||||||||||||||||||||||||| |
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| T |
32417838 |
tgcttcttagaatttctctcctatgct |
32417864 |
T |
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