View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3740_low_1 (Length: 858)

Name: NF3740_low_1
Description: NF3740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3740_low_1
NF3740_low_1
[»] chr8 (15 HSPs)
chr8 (19-852)||(10682693-10683526)
chr8 (692-800)||(44912966-44913074)
chr8 (168-517)||(200452-200801)
chr8 (168-517)||(315289-315638)
chr8 (168-517)||(30408571-30408920)
chr8 (168-517)||(43810251-43810600)
chr8 (692-830)||(43811260-43811398)
chr8 (692-830)||(201461-201599)
chr8 (692-830)||(316298-316436)
chr8 (692-830)||(30409580-30409718)
chr8 (140-517)||(1288364-1288743)
chr8 (168-349)||(41947023-41947204)
chr8 (743-830)||(28647153-28647240)
chr8 (692-830)||(1287569-1287707)
chr8 (743-830)||(41946058-41946145)
[»] chr5 (19 HSPs)
chr5 (302-525)||(30048864-30049087)
chr5 (611-816)||(16598070-16598275)
chr5 (168-515)||(40370015-40370362)
chr5 (34-242)||(30049134-30049343)
chr5 (168-349)||(16795877-16796058)
chr5 (168-349)||(12020497-12020678)
chr5 (168-349)||(30697004-30697185)
chr5 (168-517)||(7102142-7102491)
chr5 (692-830)||(12019531-12019669)
chr5 (692-830)||(37659469-37659607)
chr5 (168-349)||(37679244-37679425)
chr5 (743-830)||(10275279-10275366)
chr5 (692-830)||(7103151-7103289)
chr5 (692-830)||(16794911-16795049)
chr5 (611-828)||(30048062-30048276)
chr5 (692-795)||(40371024-40371127)
chr5 (256-349)||(10276232-10276325)
chr5 (692-830)||(30696038-30696176)
chr5 (403-517)||(16795709-16795823)
[»] chr2 (10 HSPs)
chr2 (168-349)||(36672259-36672440)
chr2 (168-349)||(8052600-8052781)
chr2 (692-830)||(8051634-8051772)
chr2 (692-830)||(36671293-36671431)
chr2 (256-349)||(13269387-13269480)
chr2 (168-349)||(35953200-35953381)
chr2 (745-830)||(13270358-13270443)
chr2 (743-812)||(35953920-35953989)
chr2 (403-517)||(8052432-8052546)
chr2 (403-517)||(36672091-36672205)
[»] scaffold0044 (2 HSPs)
scaffold0044 (168-517)||(47633-47982)
scaffold0044 (692-830)||(48642-48780)
[»] chr7 (5 HSPs)
chr7 (168-349)||(7942851-7943032)
chr7 (168-349)||(27758605-27758786)
chr7 (692-830)||(7943860-7943998)
chr7 (587-827)||(730353-730593)
chr7 (692-830)||(27757639-27757777)
[»] chr6 (9 HSPs)
chr6 (168-517)||(8318272-8318621)
chr6 (160-515)||(17889388-17889745)
chr6 (692-830)||(8319281-8319419)
chr6 (293-349)||(17161303-17161359)
chr6 (738-830)||(17160335-17160427)
chr6 (302-530)||(23255071-23255299)
chr6 (168-515)||(27570500-27570847)
chr6 (692-830)||(17881256-17881394)
chr6 (746-830)||(27571563-27571647)
[»] chr4 (9 HSPs)
chr4 (168-349)||(44148766-44148947)
chr4 (692-830)||(44147800-44147938)
chr4 (565-828)||(20290246-20290509)
chr4 (745-830)||(31355421-31355506)
chr4 (168-348)||(31356371-31356551)
chr4 (74-340)||(27187853-27188119)
chr4 (743-830)||(43683007-43683094)
chr4 (692-830)||(27186881-27187019)
chr4 (403-517)||(44148598-44148712)
[»] chr3 (12 HSPs)
chr3 (168-349)||(21848831-21849012)
chr3 (692-830)||(43548457-43548595)
chr3 (168-517)||(54170112-54170461)
chr3 (692-810)||(22931084-22931202)
chr3 (692-830)||(54171121-54171259)
chr3 (256-366)||(22930162-22930272)
chr3 (743-830)||(21847870-21847957)
chr3 (74-340)||(9699296-9699562)
chr3 (140-349)||(43551500-43551710)
chr3 (692-830)||(756564-756702)
chr3 (692-830)||(9698323-9698461)
chr3 (249-366)||(2682247-2682364)
[»] chr1 (8 HSPs)
chr1 (168-349)||(26313221-26313402)
chr1 (168-349)||(39795603-39795784)
chr1 (692-830)||(39794637-39794775)
chr1 (692-830)||(26312255-26312393)
chr1 (39-125)||(30643044-30643130)
chr1 (565-628)||(36617812-36617875)
chr1 (403-517)||(26313053-26313167)
chr1 (403-517)||(39795435-39795549)
[»] scaffold0027 (1 HSPs)
scaffold0027 (591-824)||(54093-54325)
[»] scaffold0009 (1 HSPs)
scaffold0009 (717-830)||(64579-64692)


Alignment Details
Target: chr8 (Bit Score: 778; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 778; E-Value: 0
Query Start/End: Original strand, 19 - 852
Target Start/End: Original strand, 10682693 - 10683526
Alignment:
Q  19 ccacacacatctgagtatattacattcagaatctcagttgatctatgagctgtgtttgaacttaatgcatttctaggttgcttgtctatcaagcaaacat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||    
T  10682693 ccacacacatctgagtatattacattcagaatctcagttgatctatgagctgtgtttgaacttaatgcatttctaagttgctggcctatcaagcaaacat 10682792  T
Q  119 cacaaactttctctggtacattcaattttggtgctccttggatcaattatttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctata 218  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10682793 cccaaactttctctggtacattcaattttggtgctccttggatcaattatttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctata 10682892  T
Q  219 gtaccagaaccaactaacttcattgcttacagttgttgataaacatttcaattcaacaactttcatatttgctaaaaatgttttattttttgcaagagga 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10682893 gtaccagaaccaactaacttcattgcttacagttgttgataaacatttcaactcaacaactttcatatttgctaaaaatgttttattttttgcaagagga 10682992  T
Q  319 gttttcaaaactaacctttgatttttatcaaccagtttcaaagaattaaacatcattattactgagtaacctttttgcacaagttgacctacactgagca 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10682993 gttttcaaaactaacctttgatttttatcaaccagtttcaaagaattaaacatcattattattgagtaacctttttgcacaagttgacctacactgagca 10683092  T
Q  419 agttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttcccatgccttctgcaaccag 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10683093 agttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttcccatgccttctgcaaccag 10683192  T
Q  519 ggttctaagatctacatgtttcacttttctgagagctttgcagcttttcaatcttcatggttttcatgtcctttgattcttaaatagccataactatgaa 618  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10683193 ggttctaagatctacatgtttcacttttctgagagctttgcagcttttcaatattcatggttttcatgtcctttgattcttaaatagccataactatgaa 10683292  T
Q  619 atcaaatcttggggatagagttcacatgatcttctaaacaatatgttaatctgaaattgtttaactgcatgtgttcatctgattgaaaatattaatcagt 718  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10683293 atcaaatcttggggatagagttcacatgatcttctaaacaatatgttaatctgaaattgtttaactgcatgtcttcatctgattgaaaatattaatcagt 10683392  T
Q  719 ttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcac 818  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10683393 ttggatatgtaatcaacaatttttttatcatcttccatctgcatcagtttaaatttccttcttagagactgaagcttgatctgcttcaccttttcatcac 10683492  T
Q  819 attcatgatactcttctagtatatcctatgcttc 852  Q
     |||| |||||||||||||||||||| |||||||    
T  10683493 cttcacgatactcttctagtatatcccatgcttc 10683526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 692 - 800
Target Start/End: Original strand, 44912966 - 44913074
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || |||| |||||||||| |||||||||||||| ||||| ||||||||||| ||||||| |||||| || ||||||| ||||||||    
T  44912966 ttcatctgatttacaacattattcagtttggagatgtaatcaacaatcttttgctcatcttccatttgcatcatttcaaactttcttcttaaagactgaa 44913065  T
Q  792 gcttgatct 800  Q
    |||| ||||    
T  44913066 gctttatct 44913074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 168 - 517
Target Start/End: Original strand, 200452 - 200801
Alignment:
Q  168 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 267  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  200452 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccatagcagataaacagttc 200551  T
Q  268 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaaccagtttcaaagaatta 366  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||||  ||||||| ||  || || |  ||     
T  200552 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttg 200650  T
Q  367 aacatcattattactgagtaacctttttgcacaagttgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagtta 466  Q
      | ||||  | |||||||| ||||| || |  |  ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  |    
T  200651 tccttcatagtaactgagtatcctttctgaatgaactgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgcca 200750  T
Q  467 tttttccaatcttgccttcaattgcaatttttcccatgccttctgcaacca 517  Q
     ||| ||| |||| |||||||| ||||| || ||||| |||||||||||||    
T  200751 ctttcccattctttccttcaatagcaatattccccattccttctgcaacca 200801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 168 - 517
Target Start/End: Original strand, 315289 - 315638
Alignment:
Q  168 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 267  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  315289 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccatagcagataaacagttc 315388  T
Q  268 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaaccagtttcaaagaatta 366  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||||  ||||||| ||  || || |  ||     
T  315389 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttg 315487  T
Q  367 aacatcattattactgagtaacctttttgcacaagttgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagtta 466  Q
      | ||||  | |||||||| ||||| || |  |  ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  |    
T  315488 tccttcatagtaactgagtatcctttctgaatgaactgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgcca 315587  T
Q  467 tttttccaatcttgccttcaattgcaatttttcccatgccttctgcaacca 517  Q
     ||| ||| |||| |||||||| ||||| || ||||| |||||||||||||    
T  315588 ctttcccattctttccttcaatagcaatattccccattccttctgcaacca 315638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 168 - 517
Target Start/End: Original strand, 30408571 - 30408920
Alignment:
Q  168 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 267  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  30408571 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccatagcagataaacagttc 30408670  T
Q  268 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaaccagtttcaaagaatta 366  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||||  ||||||| ||  || || |  ||     
T  30408671 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttg 30408769  T
Q  367 aacatcattattactgagtaacctttttgcacaagttgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagtta 466  Q
      | ||||  | |||||||| ||||| || |  |  ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  |    
T  30408770 tccttcatagtaactgagtatcctttctgaatgaactgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgcca 30408869  T
Q  467 tttttccaatcttgccttcaattgcaatttttcccatgccttctgcaacca 517  Q
     ||| ||| |||| |||||||| ||||| || ||||| |||||||||||||    
T  30408870 ctttcccattctttccttcaatagcaatattccccattccttctgcaacca 30408920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 168 - 517
Target Start/End: Original strand, 43810251 - 43810600
Alignment:
Q  168 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 267  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  43810251 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccatagcagataaacagttc 43810350  T
Q  268 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaaccagtttcaaagaatta 366  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||||  ||||||| ||  || || |  ||     
T  43810351 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttg 43810449  T
Q  367 aacatcattattactgagtaacctttttgcacaagttgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagtta 466  Q
      | ||||  | |||||||| ||||| || |  |  ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  |    
T  43810450 tccttcatagtaactgagtatcctttctgaatgaactgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgcca 43810549  T
Q  467 tttttccaatcttgccttcaattgcaatttttcccatgccttctgcaacca 517  Q
     ||| ||| |||| |||||||| ||||| || ||||| |||||||||||||    
T  43810550 ctttcccattctttccttcaatagcaatattccccattccttctgcaacca 43810600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 692 - 830
Target Start/End: Original strand, 43811260 - 43811398
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || |||||| ||||| || ||||| |||  ||| || |||||||||||||| ||||||| ||||||||||||||| ||||| ||||    
T  43811260 ttcatctgattcacaagattaatgagtttagagatgtattcagaaatcttctgatcatcttccatttgcatcaattcaaatttccttctcagagattgaa 43811359  T
Q  792 gcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  43811360 gcttaatcaacttcactttatcatcaccttcatgatact 43811398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 692 - 830
Target Start/End: Original strand, 201461 - 201599
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  201461 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 201560  T
Q  792 gcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  201561 gcttaatcaacttcactttatcatcaccttcatgatact 201599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 692 - 830
Target Start/End: Original strand, 316298 - 316436
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  316298 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 316397  T
Q  792 gcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  316398 gcttaatcaacttcactttatcatcaccttcatgatact 316436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 692 - 830
Target Start/End: Original strand, 30409580 - 30409718
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  30409580 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 30409679  T
Q  792 gcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  30409680 gcttaatcaacttcactttatcatcaccttcatgatact 30409718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 517
Target Start/End: Complemental strand, 1288743 - 1288364
Alignment:
Q  140 tcaatttt-ggtgctccttggatcaattatttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaactt 238  Q
    |||||||| ||| ||||| | |||| || ||||||||| |||||| | |||| ||||||||| | ||| |||||||||||||  || ||||| ||| |||    
T  1288743 tcaattttaggtactcctagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgtcataaccatctatctt 1288644  T
Q  239 cattgcttacagttgttgataaacatttcaattcaacaactttcatatttgctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttg 338  Q
    |||   ||||  | |  |||||||| ||||| || ||| |||||||||| |    ||| ||| |||| |||||||||||||||||||| || ||||||||    
T  1288643 catcttttaccatagcagataaacagttcaactctacagctttcatattggtatgaaaagttctattctttgcaagaggagttttcaataccaacctttg 1288544  T
Q  339 at-ttttatcaaccagtttcaaagaattaaacatcattattactgagtaacctttttgcacaagttgacctacactgagcaagttacattgcatcccagt 437  Q
    || ||||||||| ||  || || |  ||   | ||||  | |||||||| ||||| || |  | ||||| |||||| |||||||| || ||||| ||||     
T  1288543 atgttttatcaaacaacttaaaggtgttgtccttcatagtaactgagtatcctttctgaatgaattgacatacactcagcaagttgcactgcattccagg 1288444  T
Q  438 aacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttcccatgccttctgcaacca 517  Q
    |||||| || || || ||||||||    ||||| ||| |||| ||||||||  |||| |||||||| |||||||||||||    
T  1288443 aacatagataacttcctcaattattaccattttcccattctttccttcaataacaatatttcccattccttctgcaacca 1288364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 168 - 349
Target Start/End: Complemental strand, 41947204 - 41947023
Alignment:
Q  168 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 267  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||| | ||| ||||| ||| ||||||   ||||  | |  |||||||| |||    
T  41947204 tttatcaactaattgattaagacctctaaaattgagatgaccaaatctataatgccataaccagctatcttcatcttttaccatagcagataaacagttc 41947105  T
Q  268 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaa 349  Q
    || || ||| |||||||||| | || |||| ||| |||| |||||||||||||||||||| |||||| |||||| ||||||||    
T  41947104 aaatctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaatactaacatttgatgtttatcaa 41947023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 743 - 830
Target Start/End: Complemental strand, 28647240 - 28647153
Alignment:
Q  743 tgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||||||||||||| ||||||||||||||||||||||||||  | |||||||| |||   || || || ||||||| |||||||||||    
T  28647240 tgatcatcttccatttgcatcagttcaaatttccttcttagttattgaagcttaatcaatttcactttatcatcaccttcatgatact 28647153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 692 - 830
Target Start/End: Complemental strand, 1287707 - 1287569
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||||| |||||| ||||||||| |||| || || ||||    
T  1287707 ttcatctgattcacaagattgatgagtttagagatgtattcagaaatcttctgatcatcttccatctacatcagctcaaatttctttctcagtgattgaa 1287608  T
Q  792 gcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||| |||   || ||||| ||||||| |||||||||||    
T  1287607 gcttaatcgatttcaccttatcatcaccttcatgatact 1287569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 743 - 830
Target Start/End: Complemental strand, 41946145 - 41946058
Alignment:
Q  743 tgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||||||||||||||| |||||| ||||||||||| | ||| || |||||||| |||  ||| || || ||||||| |||||||||||    
T  41946145 tgatcatcttccatctacatcagctcaaatttcctccgtagtgattgaagcttaatcaacttcactttatcatcaccttcatgatact 41946058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 3e-32; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 302 - 525
Target Start/End: Complemental strand, 30049087 - 30048864
Alignment:
Q  302 tattttttgcaagaggagttttcaaaactaacctttgatttttatcaaccagtttcaaagaattaaacatcattattactgagtaacctttttgcacaag 401  Q
    |||| |||||||| |||||||||| ||||||||||||||||||||||| || ||||||||| |||  | ||||| ||||||| || || |||||||| |     
T  30049087 tattctttgcaaggggagttttcagaactaacctttgatttttatcaaacaatttcaaagagttatccttcattgttactgaatagcccttttgcaccaa 30048988  T
Q  402 ttgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttccc 501  Q
    |||||||||||| | |||||| |||| ||||||  ||| ||| |||||||||| |||||   ||| ||||||| |||| | ||||||  |||| ||||||    
T  30048987 ttgacctacactcaacaagttgcattacatccccataatataaatcacatcttaaattactattaattttccattctttctttcaataacaatctttccc 30048888  T
Q  502 atgccttctgcaaccagggttcta 525  Q
    ||||||| | |||| || ||||||    
T  30048887 atgccttttccaactagtgttcta 30048864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 611 - 816
Target Start/End: Original strand, 16598070 - 16598275
Alignment:
Q  611 actatgaaatcaaatcttggggatagagttcacatgatcttctaaacaatatgttaatctgaaattgtttaactgcatgtgttcatctgattgaaaatat 710  Q
    |||||||||||||| ||| | |||||||||| ||||||||||| |||||| |||  ||||||||| |||| ||| ||||  |||||| ||||   || ||    
T  16598070 actatgaaatcaaaccttagagatagagttctcatgatcttctcaacaatttgtggatctgaaatagtttcactccatgccttcatccgattttcaacat 16598169  T
Q  711 taatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttacctt 810  Q
    ||||||  || || |||||||||||||| || || ||||||||||| |||| |  |||||||||||||| || ||| |||||||| |||| ||| |||||    
T  16598170 taatcatcttagagatgtaatcaacaatcttctgctcatcttccatttgcaactattcaaatttccttcataaagagtgaagctttatctacttcacctt 16598269  T
Q  811 ttcatc 816  Q
    ||||||    
T  16598270 ttcatc 16598275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 168 - 515
Target Start/End: Original strand, 40370015 - 40370362
Alignment:
Q  168 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 267  Q
    ||||||||| |||||  | |||| ||||||||| | ||| ||||||||||||| ||| ||||| ||| ||||||   ||||  | |  |||||||| |||    
T  40370015 tttatcaaccaattggttaagacctctaaaattgagatgaccaaatctatagtgccataaccagctatcttcatcttttaccatagcagataaacagttc 40370114  T
Q  268 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaaccagtttcaaagaatta 366  Q
    ||||| |||||||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||||  ||||||| ||  || || |  ||     
T  40370115 aattctacaactttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttg 40370213  T
Q  367 aacatcattattactgagtaacctttttgcacaagttgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagtta 466  Q
      | ||||  | |||||||| ||||| || |  | |||||||||||| |||||||| || ||||| |||| |||||| |  || ||||||||||| |  |    
T  40370214 tccttcatagtaactgagtatcctttatgaatgaattgacctacactcagcaagttgcactgcattccaggaacatagagaacttcttcaattattgcca 40370313  T
Q  467 tttttccaatcttgccttcaattgcaatttttcccatgccttctgcaac 515  Q
     ||| ||| |||| |||||||| ||||| || ||||| |||||||||||    
T  40370314 ctttcccattctttccttcaatagcaatgttccccattccttctgcaac 40370362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 34 - 242
Target Start/End: Complemental strand, 30049343 - 30049134
Alignment:
Q  34 tatattacattcagaatctcagttgatctatgagctgtgtttgaacttaatgcatttctaggttgcttgtctatcaagcaaac-atcacaaactttctct 132  Q
    |||| ||||||||  | ||| ||| ||||||||| ||| |||| ||| |||||||||||||||||||||| ||||||  |||  |||||| | |||||||    
T  30049343 tatactacattcaacacctctgttaatctatgagttgtatttgcactgaatgcatttctaggttgcttgtttatcaaaaaaaatatcacatattttctct 30049244  T
Q  133 ggtacattcaattttggtgctccttggatcaattatttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaac 232  Q
    |||| |||||| |||||| |||||   ||||||| ||  ||||| || ||| | |||| ||||||||||||||| |||||||| |||| ||| ||| |||    
T  30049243 ggtatattcaactttggtactcctaaaatcaattcttcgtcaactaactgattaagacttctaaaatttaaatgaccaaatctgtagtcccataactaac 30049144  T
Q  233 taacttcatt 242  Q
    || |||||||    
T  30049143 tatcttcatt 30049134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 168 - 349
Target Start/End: Complemental strand, 16796058 - 16795877
Alignment:
Q  168 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 267  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  16796058 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccatagcagataaacagttc 16795959  T
Q  268 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaa 349  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||||  |||||||    
T  16795958 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaa 16795877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 168 - 349
Target Start/End: Complemental strand, 12020678 - 12020497
Alignment:
Q  168 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 267  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||| ||| ||||||   ||||  | |  |||||||| |||    
T  12020678 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccagctatcttcatcttttaccatagcagataaacagttc 12020579  T
Q  268 aattcaacaactttcatatttgctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaa 349  Q
    ||||| ||| |||||||||| |    ||| ||| |||| ||||||||||||||||||||||||||||||||||  |||||||    
T  12020578 aattctacagctttcatattggtctgaaaggttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaa 12020497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 168 - 349
Target Start/End: Complemental strand, 30697185 - 30697004
Alignment:
Q  168 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 267  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||| ||| ||||||   ||||  | |  |||||||| |||    
T  30697185 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccagctatcttcatcttttaccatagcagataaacagttc 30697086  T
Q  268 aattcaacaactttcatatttgctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaa 349  Q
    ||||| ||| |||||||||| |    ||| ||| |||| ||||||||||||||||||||||||||||||||||  |||||||    
T  30697085 aattctacagctttcatattggtctgaaaggttatattctttgcaagaggagttttcaaaactaacctttgatgattatcaa 30697004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 168 - 517
Target Start/End: Original strand, 7102142 - 7102491
Alignment:
Q  168 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 267  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||| | ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  7102142 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatattgccataaccaactatcttcatcttttaccatagcagataaacagttc 7102241  T
Q  268 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaaccagtttcaaagaatta 366  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||||  ||||||| ||  || || |  ||     
T  7102242 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttg 7102340  T
Q  367 aacatcattattactgagtaacctttttgcacaagttgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagtta 466  Q
      | ||||  | |||||||| ||||| || |  |  ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  |    
T  7102341 tccttcatagtaactgagtatcctttctgaatgaactgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgcca 7102440  T
Q  467 tttttccaatcttgccttcaattgcaatttttcccatgccttctgcaacca 517  Q
     ||| ||| |||| |||||||| ||||| || ||||| |||||||||||||    
T  7102441 ctttcccattctttccttcaatagcaatattccccattccttctgcaacca 7102491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 692 - 830
Target Start/End: Complemental strand, 12019669 - 12019531
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || |||||| ||||| || ||||| |||  ||| || |||||||||||||| ||||||| ||||||||||||||| ||||| ||||    
T  12019669 ttcatctgattcacaagattaatgagtttagagatgtattcagaaatcttctgatcatcttccatttgcatcaattcaaatttccttctcagagattgaa 12019570  T
Q  792 gcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  12019569 gcttaatcaacttcactttatcatcaccttcatgatact 12019531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 692 - 830
Target Start/End: Complemental strand, 37659607 - 37659469
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || |||||| ||||| || ||||| |||  ||| || |||||||||||||| ||||||| ||||||||||||||| ||||| ||||    
T  37659607 ttcatctgattcacaagattaatgagtttagagatgtattcagaaatcttctgatcatcttccatttgcatcaattcaaatttccttctcagagattgaa 37659508  T
Q  792 gcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  37659507 gcttaatcaacttcactttatcatcaccttcatgatact 37659469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 168 - 349
Target Start/End: Complemental strand, 37679425 - 37679244
Alignment:
Q  168 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 267  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||| ||| ||||||   ||||  |    |||||||| |||    
T  37679425 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccagctatcttcatcttttaccatatcagataaacagttc 37679326  T
Q  268 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaa 349  Q
    ||||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||||  |||||||    
T  37679325 aattctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaa 37679244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 743 - 830
Target Start/End: Complemental strand, 10275366 - 10275279
Alignment:
Q  743 tgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatact 830  Q
    ||||||||||||||||||||||| ||||||||||||||||| || |||||||| |||  ||| || || ||||||| |||||||||||    
T  10275366 tgatcatcttccatctgcatcagctcaaatttccttcttagtgattgaagcttaatcaacttcactttatcatcaccttcatgatact 10275279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 692 - 830
Target Start/End: Original strand, 7103151 - 7103289
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  7103151 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 7103250  T
Q  792 gcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  7103251 gcttaatcaacttcactttatcatcaccttcatgatact 7103289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 692 - 830
Target Start/End: Complemental strand, 16795049 - 16794911
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  16795049 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 16794950  T
Q  792 gcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  16794949 gcttaatcaacttcactttatcatcaccttcatgatact 16794911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 611 - 828
Target Start/End: Complemental strand, 30048276 - 30048062
Alignment:
Q  611 actatgaaatcaaatcttggggatagagttcacatgatcttctaaacaatatgttaatctgaaattgtttaactgcatgtgttcatctgattgaaaatat 710  Q
    ||||| |||| ||||||||| ||||| ||||  |||||| ||| || ||| |||||||| || ||||||| ||||||||  ||||| ||    | || ||    
T  30048276 actataaaataaaatcttggagatagtgttcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgccttcatttgt---acaacat 30048180  T
Q  711 taatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttacctt 810  Q
    ||||||  ||  | |||||||||| ||| ||||| || |||||||| |||||||  | |||||||||||||| |||| ||||||| |||| ||| |||||    
T  30048179 taatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagaccgaagctttatctccttcacctt 30048080  T
Q  811 ttcatcacattcatgata 828  Q
     ||||| | |||||||||    
T  30048079 ctcatctccttcatgata 30048062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 692 - 795
Target Start/End: Original strand, 40371024 - 40371127
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| ||||||||||||||||||||||| || |||||||    
T  40371024 ttcatctgattcacaagattgatgagtttagagatgtattcagaaatcttctgatcatcttccatttgcatcagttcaaatttccttctcagtgactgaa 40371123  T
Q  792 gctt 795  Q
    ||||    
T  40371124 gctt 40371127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 256 - 349
Target Start/End: Complemental strand, 10276325 - 10276232
Alignment:
Q  256 gataaacatttcaattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaa 349  Q
    |||||||| |||||||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||||  |||||||    
T  10276325 gataaacagttcaattctacagctttcatattggtctgaaaa-gttatattctttgcaagaggagttttcaaaactaacctttgataattatcaa 10276232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 692 - 830
Target Start/End: Complemental strand, 30696176 - 30696038
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| || || ||||    
T  30696176 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagtgattgaa 30696077  T
Q  792 gcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||| |||  ||| || || ||||||| |||||| ||||    
T  30696076 gcttaatcaacttcactttatcatcaccttcatggtact 30696038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 517
Target Start/End: Complemental strand, 16795823 - 16795709
Alignment:
Q  403 tgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttccca 502  Q
    ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  | ||| ||| |||| |||||||| ||||| || ||||    
T  16795823 tgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattctttccttcaatagcaatattcccca 16795724  T
Q  503 tgccttctgcaacca 517  Q
    | |||||||||||||    
T  16795723 ttccttctgcaacca 16795709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 2e-24; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 168 - 349
Target Start/End: Complemental strand, 36672440 - 36672259
Alignment:
Q  168 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 267  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  |||  |||||||| |||    
T  36672440 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccattgcagataaacagttc 36672341  T
Q  268 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaa 349  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||||  |||||||    
T  36672340 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaa 36672259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 168 - 349
Target Start/End: Complemental strand, 8052781 - 8052600
Alignment:
Q  168 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 267  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  8052781 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccatagcagataaacagttc 8052682  T
Q  268 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaa 349  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||||  |||||||    
T  8052681 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaa 8052600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 692 - 830
Target Start/End: Complemental strand, 8051772 - 8051634
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  8051772 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 8051673  T
Q  792 gcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  8051672 gcttaatcaacttcactttatcatcaccttcatgatact 8051634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 692 - 830
Target Start/End: Complemental strand, 36671431 - 36671293
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  36671431 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 36671332  T
Q  792 gcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  36671331 gcttaatcaacttcactttatcatcaccttcatgatact 36671293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 256 - 349
Target Start/End: Original strand, 13269387 - 13269480
Alignment:
Q  256 gataaacatttcaattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaa 349  Q
    |||||||| ||||| || |||||||||||||| | || ||||| || |||| |||||||||||||||||||| ||||||||||||| ||||||||    
T  13269387 gataaacagttcaactctacaactttcatattggtctgaaaat-ttctattctttgcaagaggagttttcaatactaacctttgatgtttatcaa 13269480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 168 - 349
Target Start/End: Original strand, 35953200 - 35953381
Alignment:
Q  168 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 267  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||| || || ||||||   ||||  |    |||||||| |||    
T  35953200 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataacaaaatatcttcatcttttaccataacagataaacagttc 35953299  T
Q  268 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaa 349  Q
    || || ||| |||||||||| | || |||| ||| |||| |||||||||||||||||||| ||||||||||||| ||||||||    
T  35953300 aaatctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaatactaacctttgatgtttatcaa 35953381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 745 - 830
Target Start/End: Original strand, 13270358 - 13270443
Alignment:
Q  745 atcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||||||||||| |||||||| |||||||||||||| || || |||||||| |||  ||| || || ||||||| |||||||||||    
T  13270358 atcatcttccatttgcatcagctcaaatttccttctcagtgattgaagcttaatcaacttcactttatcatcaccttcatgatact 13270443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 743 - 812
Target Start/End: Original strand, 35953920 - 35953989
Alignment:
Q  743 tgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttacctttt 812  Q
    |||||||||||||| |||||||| |||||||||||||| || || |||||||| |||  |||||| ||||    
T  35953920 tgatcatcttccatttgcatcagctcaaatttccttctcagtgattgaagcttaatcaactttacttttt 35953989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 517
Target Start/End: Complemental strand, 8052546 - 8052432
Alignment:
Q  403 tgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttccca 502  Q
    ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  | ||| ||| |||| |||||||| ||||| || ||||    
T  8052546 tgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattctttccttcaatagcaatattcccca 8052447  T
Q  503 tgccttctgcaacca 517  Q
    | |||||||||||||    
T  8052446 ttccttctgcaacca 8052432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 517
Target Start/End: Complemental strand, 36672205 - 36672091
Alignment:
Q  403 tgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttccca 502  Q
    ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  | ||| ||| |||| |||||||| ||||| || ||||    
T  36672205 tgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattctttccttcaatagcaatattcccca 36672106  T
Q  503 tgccttctgcaacca 517  Q
    | |||||||||||||    
T  36672105 ttccttctgcaacca 36672091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 55; Significance: 4e-22; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 168 - 517
Target Start/End: Original strand, 47633 - 47982
Alignment:
Q  168 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 267  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||| ||| ||||||   ||||  | |  |||||||| |||    
T  47633 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccagctatcttcatcttttaccatagcagataaacagttc 47732  T
Q  268 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaaccagtttcaaagaatta 366  Q
    ||||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||||  ||||||| ||  || || |  ||     
T  47733 aattctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttg 47831  T
Q  367 aacatcattattactgagtaacctttttgcacaagttgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagtta 466  Q
      | ||||  | |||||||| ||||| || |  |  ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  |    
T  47832 tccttcatagtaactgagtatcctttctgaatgaactgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgcca 47931  T
Q  467 tttttccaatcttgccttcaattgcaatttttcccatgccttctgcaacca 517  Q
     ||| ||| |||| |||||||| ||||| || ||||| |||||||||||||    
T  47932 ctttcccattctttccttcaatagcaatattccccattccttctgcaacca 47982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 692 - 830
Target Start/End: Original strand, 48642 - 48780
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  48642 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 48741  T
Q  792 gcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  48742 gcttaatcaacttcactttatcatcaccttcatgatact 48780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 4e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 168 - 349
Target Start/End: Original strand, 7942851 - 7943032
Alignment:
Q  168 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 267  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  7942851 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccatagcagataaacagttc 7942950  T
Q  268 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaa 349  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||||  |||||||    
T  7942951 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaa 7943032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 168 - 349
Target Start/End: Complemental strand, 27758786 - 27758605
Alignment:
Q  168 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 267  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  27758786 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccatagcagataaacagttc 27758687  T
Q  268 aattcaacaactttcatatttgctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaa 349  Q
    | ||| ||| |||||||||| |    ||| ||| |||| ||||||||||||||||||||||||||||||||||  |||||||    
T  27758686 agttctacagctttcatattggtctgaaaggttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaa 27758605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 692 - 830
Target Start/End: Original strand, 7943860 - 7943998
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  7943860 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 7943959  T
Q  792 gcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  7943960 gcttaatcaacttcactttatcatcaccttcatgatact 7943998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 587 - 827
Target Start/End: Complemental strand, 730593 - 730353
Alignment:
Q  587 tcctttgattcttaaatagccataactatgaaatcaaatcttggggatagagttcacatgatcttctaaacaatatgttaatctgaaattgtttaactgc 686  Q
    ||||||||||||| ||| || |  ||||| |||||||||||||  ||||| |||| ||| || |||| |||||| |||| ||| |  |||| ||  |  |    
T  730593 tcctttgattcttgaattgcaaccactataaaatcaaatcttgatgatagtgttctcatcattttctcaacaatttgttgatcagtcattgcttctccac 730494  T
Q  687 atgtgttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagaga 786  Q
    | |  ||||||||||| | |||||| || |||||||| || || ||| |||| ||||| || || ||||||||||||| |||||| |||||||| | |||    
T  730493 aagccttcatctgattcacaatattgatgagtttggagatatattcagcaatattttgctcttcctccatctgcatcaattcaaacttccttctcaaaga 730394  T
Q  787 ctgaagcttgatctgctttaccttttcatcacattcatgat 827  Q
    ||||||||| |||  ||| ||||| ||||| | ||||||||    
T  730393 ctgaagcttaatcaacttcaccttatcatcgccttcatgat 730353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 692 - 830
Target Start/End: Complemental strand, 27757777 - 27757639
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  27757777 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 27757678  T
Q  792 gcttgatctgctttaccttttcatcacattcatgatact 830  Q
    | || |||  ||| || || ||||||| |||||||||||    
T  27757677 gtttaatcaacttcactttatcatcaccttcatgatact 27757639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 4e-22; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 168 - 517
Target Start/End: Original strand, 8318272 - 8318621
Alignment:
Q  168 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 267  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  8318272 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccatagcagataaacagttc 8318371  T
Q  268 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaaccagtttcaaagaatta 366  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||||  ||||||| ||  || || |  ||     
T  8318372 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttg 8318470  T
Q  367 aacatcattattactgagtaacctttttgcacaagttgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagtta 466  Q
      | ||||  | |||||||| ||||| || |  |  ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  |    
T  8318471 tccttcatagtaactgagtatcctttctgaatgaactgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgcca 8318570  T
Q  467 tttttccaatcttgccttcaattgcaatttttcccatgccttctgcaacca 517  Q
     ||| ||| |||| |||||||| ||||| || ||||| |||||||||||||    
T  8318571 ctttcccattctttccttcaatagcaatattccccattccttctgcaacca 8318621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 160 - 515
Target Start/End: Original strand, 17889388 - 17889745
Alignment:
Q  160 atcaattatttatcaacaaattgagtgagacgtctaaaatttaaatggccaaa--tctatagtaccagaaccaactaacttcattgcttacagttgttga 257  Q
    |||| |||||||||||| |||||| | |||| ||||||||| | ||| |||||  |||||||| ||| ||||| ||| ||||||   ||||  | |  ||    
T  17889388 atcatttatttatcaaccaattgattaagacctctaaaattgagatgaccaaaaatctatagtgccataaccagctatcttcatcttttaccatagcaga 17889487  T
Q  258 taaacatttcaattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaaccagttt 356  Q
    |||||| |||||||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||||  ||||||| ||  ||    
T  17889488 taaacagttcaattctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaactt 17889586  T
Q  357 caaagaattaaacatcattattactgagtaacctttttgcacaagttgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttca 456  Q
     || |  ||   | ||||  | |||||||| ||||| || |  | |||||||||||| |||||||| || ||||| |||| |||||| |  || |||| |    
T  17889587 aaaggtgttttccttcatagtaactgagtatcctttctgaatgaattgacctacactcagcaagttgcactgcattccaggaacatagagaacttcttaa 17889686  T
Q  457 attatagttatttttccaatcttgccttcaattgcaatttttcccatgccttctgcaac 515  Q
    ||||| |  | ||| ||| |||| |||||||| ||||| || ||||| |||||||||||    
T  17889687 attattgccactttcccattctttccttcaatagcaatattccccattccttctgcaac 17889745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 692 - 830
Target Start/End: Original strand, 8319281 - 8319419
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  8319281 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 8319380  T
Q  792 gcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  8319381 gcttaatcaacttcactttatcatcaccttcatgatact 8319419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 17161359 - 17161303
Alignment:
Q  293 aaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaa 349  Q
    |||| ||| ||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  17161359 aaaaagttctattttttgcaagaggagttttcaatactaacctttgatgtttatcaa 17161303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 738 - 830
Target Start/End: Complemental strand, 17160427 - 17160335
Alignment:
Q  738 ttttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||||| ||||||||||||||||||||| ||||||||||| || || || |||||||| |||  ||| || || ||||||| |||||| ||||    
T  17160427 tttttttatcatcttccatctgcatcagctcaaatttcctcctcagtgattgaagcttaatcaacttcactttatcatcaccttcatggtact 17160335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 302 - 530
Target Start/End: Complemental strand, 23255299 - 23255071
Alignment:
Q  302 tattttttgcaagaggagttttcaaaactaacctttgatttttatcaaccagtttcaaagaattaaacatcattattactgagtaacctttttgcacaag 401  Q
    |||| |||||||| ||||||||||| ||||||| |||||| ||||||| ||||||||  || |||  | | || |||||| |||| |||||||| || |     
T  23255299 tattctttgcaaggggagttttcaacactaaccattgattcttatcaaacagtttcagggagttatccttaatgattactcagtagcctttttgaactaa 23255200  T
Q  402 ttgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttccc 501  Q
     ||||  ||||| | ||| ||||| | ||| | || | |||| |  ||||| ||||||||   ||| |||||| |||| |||||||| ||||| || |||    
T  23255199 ctgactaacacttaacaaattacacttcatgctaggagcatagagtacatcctcaattattaatatctttccattctttccttcaatagcaatattcccc 23255100  T
Q  502 atgccttctgcaaccagggttctaagatc 530  Q
    || ||||||||||| || |||||| ||||    
T  23255099 attccttctgcaactagtgttctatgatc 23255071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 515
Target Start/End: Original strand, 27570500 - 27570847
Alignment:
Q  168 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 267  Q
    ||||||||| |||| | | |||| ||||||||| | ||| ||||||||||||| ||| ||||||| | ||||||   ||||  | |  |||||||| |||    
T  27570500 tttatcaaccaatttattaagacctctaaaattgagatgaccaaatctatagtgccataaccaacaaccttcatcttttaccatagcagataaacagttc 27570599  T
Q  268 aattcaacaactttcatatttgctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaaccagtttcaaagaattaa 367  Q
    || || ||| |||||||||| |    ||| ||| |||| ||||||||| |||||||||| |||||||||||||  | ||||| ||  || || |  ||      
T  27570600 aaatctacagctttcatattggtctgaaaggttctattctttgcaagaagagttttcaatactaacctttgatgatgatcaaacaacttaaaggtgttgt 27570699  T
Q  368 acatcattattactgagtaacctttttgcacaagttgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttat 467  Q
     | ||||  | |||||||| ||||| || |  | |||||||||||| |||||||| || ||||| | || |||||| |  || ||||||||||| |  |     
T  27570700 ccttcatagtaactgagtatcctttctgaatgaattgacctacactcagcaagttgcactgcattctaggaacatagagaacttcttcaattattgccac 27570799  T
Q  468 ttttccaatcttgccttcaattgcaatttttcccatgccttctgcaac 515  Q
    ||| ||| |||| |||||||| ||||| || ||||| |||||||||||    
T  27570800 tttcccattctttccttcaatagcaatattccccattccttctgcaac 27570847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 692 - 830
Target Start/End: Original strand, 17881256 - 17881394
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| ||||  || |||||||||||||| || || ||||    
T  17881256 ttcatctgattcacaagattgatgagtttagagatgtattcataaatcttatgatcatcttccatttgcaatagctcaaatttccttctcagtgattgaa 17881355  T
Q  792 gcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  17881356 gcttaatcaacttcactttatcatcaccttcatgatact 17881394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 746 - 830
Target Start/End: Original strand, 27571563 - 27571647
Alignment:
Q  746 tcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatact 830  Q
    ||||||||||| |||||||||||||| |||||||| || || |||||||| |||   || || || ||||||| |||||||||||    
T  27571563 tcatcttccatttgcatcagttcaaacttccttctcagtgattgaagcttaatcaatttcactttatcatcaccttcatgatact 27571647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 4e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 168 - 349
Target Start/End: Complemental strand, 44148947 - 44148766
Alignment:
Q  168 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 267  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  44148947 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccatagcagataaacagttc 44148848  T
Q  268 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaa 349  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||||  |||||||    
T  44148847 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaa 44148766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 692 - 830
Target Start/End: Complemental strand, 44147938 - 44147800
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  44147938 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 44147839  T
Q  792 gcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  44147838 gcttaatcaacttcactttatcatcaccttcatgatact 44147800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 565 - 828
Target Start/End: Complemental strand, 20290509 - 20290246
Alignment:
Q  565 ttcaatcttcatggttttcatgtcctttgattcttaaatagccataactatgaaatcaaatcttggggatagagttcacatgatcttctaaacaatatgt 664  Q
    |||||||||||  |||||||  ||||||||||| | ||| || |  ||||| |||||||||||||| ||||| |||| |||||| |||| |||||| |||    
T  20290509 ttcaatcttcaaagttttcacatcctttgattcatgaattgcaaccactataaaatcaaatcttggagatagtgttctcatgattttctcaacaatttgt 20290410  T
Q  665 taatctgaaattgtttaactgcatgtgttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatca 764  Q
    | ||||| || |  ||  |   | |  || |||||||| | || ||| || |||||||| ||||||||| |||| || |  ||||| ||||| |||||||    
T  20290409 tgatctgtaactacttctccataagcttttatctgatttacaacattgattagtttggagatgtaatcagcaatcttcttctcatcctccatttgcatca 20290310  T
Q  765 gttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgata 828  Q
     || ||| |||||||| |  ||||||||||| |||||||  ||||| ||||||| |||||||||    
T  20290309 atttaaacttccttctcaatgactgaagctttatctgctccaccttatcatcaccttcatgata 20290246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 745 - 830
Target Start/End: Complemental strand, 31355506 - 31355421
Alignment:
Q  745 atcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatact 830  Q
    ||||||||||||||||||||| |||||||||||||| || |||||||| || |||  ||| || || ||||||| |||||||||||    
T  31355506 atcatcttccatctgcatcagctcaaatttccttctcagtgactgaagtttaatcatcttcactttatcatcaccttcatgatact 31355421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 348
Target Start/End: Complemental strand, 31356551 - 31356371
Alignment:
Q  168 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 267  Q
    ||||||| | |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||| ||| ||| ||   ||||  | |  |||||||| |||    
T  31356551 tttatcatccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccagctatctttatcttttaccatagcagataaacagttc 31356452  T
Q  268 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatca 348  Q
    || || ||| |||||||||| | || |||| ||| |||| |||||||||||||||||||| ||||||||||||| |||||||    
T  31356451 aactctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaatactaacctttgatgtttatca 31356371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 74 - 340
Target Start/End: Complemental strand, 27188119 - 27187853
Alignment:
Q  74 ttgaacttaatgcatttctaggttgcttgtctatcaagcaaacatcacaaactttctctggtacattcaatttt-ggtgctccttggatcaattatttat 172  Q
    ||||||| |||||| |||||||||||||| | | |||||||  |||||||||| | |  ||||  | ||||||| ||| ||||  | |||| || |||||    
T  27188119 ttgaactgaatgcacttctaggttgcttgcccaacaagcaagtatcacaaactctgttaggtatct-caattttaggtactcccagaatcatttctttat 27188021  T
Q  173 caacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttcaattc 272  Q
    |||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||| |  || ||||||   ||||  | |  |||||||| ||||| ||    
T  27188020 caaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataactagttatcttcatcttttaccatagcagataaacagttcaactc 27187921  T
Q  273 aacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgat 340  Q
     ||| |||||||||| | || |||| ||| |||| |||||||||||||||||||| |||||||||||||    
T  27187920 tacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaatactaacctttgat 27187853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 743 - 830
Target Start/End: Original strand, 43683007 - 43683094
Alignment:
Q  743 tgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||||||||||||| || |||||||||||||||||||| || || ||||| || |||  ||| || || ||||||| |||||||||||    
T  43683007 tgatcatcttccatttgtatcagttcaaatttccttctcagtgattgaagtttaatcaacttcactttatcatcaccttcatgatact 43683094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 692 - 830
Target Start/End: Complemental strand, 27187019 - 27186881
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||| ||| |||||||||||||| || || ||||    
T  27187019 ttcatctgattcacaagattgatgagtttagagatgtattcagaaatcttctgatcatcttccatttgcaccagctcaaatttccttctcagtgattgaa 27186920  T
Q  792 gcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||| |||  ||| || || ||| ||| |||||||||||    
T  27186919 gcttaatcaacttcactttatcaccaccttcatgatact 27186881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 517
Target Start/End: Complemental strand, 44148712 - 44148598
Alignment:
Q  403 tgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttccca 502  Q
    ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  | ||| ||| |||| |||||||| ||||| || ||||    
T  44148712 tgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattctttccttcaatagcaatattcccca 44148613  T
Q  503 tgccttctgcaacca 517  Q
    | |||||||||||||    
T  44148612 ttccttctgcaacca 44148598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 4e-22; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 168 - 349
Target Start/End: Complemental strand, 21849012 - 21848831
Alignment:
Q  168 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 267  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||| ||| ||||||   ||||  | |  |||||||| |||    
T  21849012 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccagctatcttcatcttttaccatagcagataaacagttc 21848913  T
Q  268 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaa 349  Q
    ||||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||||  |||||||    
T  21848912 aattctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaa 21848831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 692 - 830
Target Start/End: Complemental strand, 43548595 - 43548457
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || ||| || ||||| |||||||| |||  ||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||    
T  43548595 ttcatctgattcacaagattgatgagtttagatatgtattcagaaatcttttgatcatcttccatctgcatcagctcaaatttccttcttagtgattgaa 43548496  T
Q  792 gcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||| |||   || || || ||||||| |||||||||||    
T  43548495 gcttaatcaatttcactttatcatcaccttcatgatact 43548457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 168 - 517
Target Start/End: Original strand, 54170112 - 54170461
Alignment:
Q  168 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 267  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  54170112 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccatagcagataaacagttc 54170211  T
Q  268 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaaccagtttcaaagaatta 366  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||||  ||||||| ||  || || |  ||     
T  54170212 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttg 54170310  T
Q  367 aacatcattattactgagtaacctttttgcacaagttgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagtta 466  Q
      | ||||  | |||||||| ||||| || |  |  ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  |    
T  54170311 tccttcatagtaactgagtatcctttctgaatgaactgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgcca 54170410  T
Q  467 tttttccaatcttgccttcaattgcaatttttcccatgccttctgcaacca 517  Q
     ||| ||| |||| |||||||| ||||| || ||||| |||||||||||||    
T  54170411 ctttcccattctttccttcaatagcaatattccccattccttctgcaacca 54170461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 692 - 810
Target Start/End: Original strand, 22931084 - 22931202
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || |||||||||  |||| |||||||||||||| ||||  ||||||||||| |||||||  ||||||||||||||||   ||||||    
T  22931084 ttcatctgatttacaacattaatcagcatggagatgtaatcaacaatctttttctcatcttccatttgcatcaactcaaatttccttcttaataactgaa 22931183  T
Q  792 gcttgatctgctttacctt 810  Q
    |||| |||||||| |||||    
T  22931184 gctttatctgcttcacctt 22931202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 692 - 830
Target Start/End: Original strand, 54171121 - 54171259
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| ||||||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  54171121 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttttgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 54171220  T
Q  792 gcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  54171221 gcttaatcaacttcactttatcatcaccttcatgatact 54171259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 256 - 366
Target Start/End: Original strand, 22930162 - 22930272
Alignment:
Q  256 gataaacatttcaattcaacaactttcatatttgctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaaccagtt 355  Q
    ||||| || ||||||| | ||||||||||||  |   ||||||||||||| |||||||| |||||||||| ||||||||||||||| ||||||| ||  |    
T  22930162 gataagcaattcaatttagcaactttcatatcagtctaaaatgttttattctttgcaaggggagttttcataactaacctttgattcttatcaaacaact 22930261  T
Q  356 tcaaagaatta 366  Q
    |||||||||||    
T  22930262 tcaaagaatta 22930272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 743 - 830
Target Start/End: Complemental strand, 21847957 - 21847870
Alignment:
Q  743 tgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||||||||||||| |||||||| |||||||||||||| ||||| |||||||| |||  ||| || || ||||||| |||||||||||    
T  21847957 tgatcatcttccatttgcatcagctcaaatttccttctcagagattgaagcttaatcaacttcactttatcatcaccttcatgatact 21847870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 74 - 340
Target Start/End: Complemental strand, 9699562 - 9699296
Alignment:
Q  74 ttgaacttaatgcatttctaggttgcttgtctatcaagcaaacatcacaaactttctctggtacattcaatttt-ggtgctccttggatcaattatttat 172  Q
    ||||||| |||||| |||||||||||||| | | |||||||  |||||||||| | |  ||||  | ||||||| ||| ||||  | |||| || |||||    
T  9699562 ttgaactgaatgcacttctaggttgcttgcccaacaagcaagtatcacaaactctgttaggtatct-caattttaggtactcccagaatcatttctttat 9699464  T
Q  173 caacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttcaattc 272  Q
    |||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||| |  || ||||||   ||||  | |  |||||||| ||||| ||    
T  9699463 caaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataactagttatcttcatcttttaccatagcagataaacagttcaactc 9699364  T
Q  273 aacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgat 340  Q
     ||| |||||||||| | || |||| ||| |||| |||||||||||||||||||| |||||||||||||    
T  9699363 tacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaatactaacctttgat 9699296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 349
Target Start/End: Complemental strand, 43551710 - 43551500
Alignment:
Q  140 tcaatttt-ggtgctccttggatcaattatttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaactt 238  Q
    |||||||| ||| ||||| | |||| || ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||| ||| |||    
T  43551710 tcaattttaggtactcctagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccagctatctt 43551611  T
Q  239 cattgcttacagttgttgataaacatttcaattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaaccttt 337  Q
    |||   | ||  | |  |||||||| || || || ||| |||||||||| | || |||| ||| ||||||||||||||||| ||||||| ||||||||||    
T  43551610 catctttaaccatagcagataaacaatttaactctacagctttcatattggtctgaaaa-gttctattttttgcaagaggaattttcaatactaaccttt 43551512  T
Q  338 gatttttatcaa 349  Q
    |||  |||||||    
T  43551511 gatgattatcaa 43551500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 692 - 830
Target Start/End: Complemental strand, 756702 - 756564
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || ||| || |||||||| ||||| |||  ||| || |||||| |||||||||||||||| |||||||| || || || || ||||    
T  756702 ttcatctgattcacaagattgatgagtttggagatgtattcagaaatcttgtgatcaacttccatctgcatcagctcaaatttactcctcagtgattgaa 756603  T
Q  792 gcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||| |||   || || || ||||||| |||||||||||    
T  756602 gcttaatcaatttcactttatcatcaccttcatgatact 756564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 692 - 830
Target Start/End: Complemental strand, 9698461 - 9698323
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||| ||| |||||||||||||| || || ||||    
T  9698461 ttcatctgattcacaagattgatgagtttagagatgtattcagaaatcttctgatcatcttccatttgcaccagctcaaatttccttctcagtgattgaa 9698362  T
Q  792 gcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||| |||  ||| || || ||| ||| |||||||||||    
T  9698361 gcttaatcaacttcactttatcaccaccttcatgatact 9698323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 249 - 366
Target Start/End: Original strand, 2682247 - 2682364
Alignment:
Q  249 agttgttgataaacatttcaattcaacaactttcatatttgctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatca 348  Q
    ||||||||| ||||| ||||| || | | |||||||||  |||  ||||||| |||| | | |||| ||||||||||| | ||| ||||||||||||| |    
T  2682247 agttgttgacaaacacttcaactctatagctttcatataagcttgaaatgttctattctctccaagtggagttttcaataataagctttgatttttatga 2682346  T
Q  349 accagtttcaaagaatta 366  Q
    |||||||| | |||||||    
T  2682347 accagttttagagaatta 2682364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 4e-22; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 168 - 349
Target Start/End: Complemental strand, 26313402 - 26313221
Alignment:
Q  168 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 267  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  26313402 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccatagcagataaacagttc 26313303  T
Q  268 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaa 349  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||||  |||||||    
T  26313302 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaa 26313221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 168 - 349
Target Start/End: Complemental strand, 39795784 - 39795603
Alignment:
Q  168 tttatcaacaaattgagtgagacgtctaaaatttaaatggccaaatctatagtaccagaaccaactaacttcattgcttacagttgttgataaacatttc 267  Q
    ||||||||| |||||| | |||| ||||||||| | ||| ||||||||||||| ||| ||||||||| ||||||   ||||  | |  |||||||| |||    
T  39795784 tttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccaactatcttcatcttttaccatagcagataaacagttc 39795685  T
Q  268 aattcaacaactttcatatttg-ctaaaaatgttttattttttgcaagaggagttttcaaaactaacctttgatttttatcaa 349  Q
    | ||| ||| |||||||||| | || |||| ||| |||| ||||||||||||||||||||||||||||||||||  |||||||    
T  39795684 agttctacagctttcatattggtctgaaaa-gttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaa 39795603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 692 - 830
Target Start/End: Complemental strand, 39794775 - 39794637
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  39794775 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgaa 39794676  T
Q  792 gcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  39794675 gcttaatcaacttcactttatcatcaccttcatgatact 39794637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 692 - 830
Target Start/End: Complemental strand, 26312393 - 26312255
Alignment:
Q  692 ttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaa 791  Q
    ||||||||||| | || ||| || ||||| || ||||| |||  ||| || |||||||||||||| |||||||| |||||||||||||| ||||| || |    
T  26312393 ttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgga 26312294  T
Q  792 gcttgatctgctttaccttttcatcacattcatgatact 830  Q
    |||| |||  ||| || || ||||||| |||||||||||    
T  26312293 gcttaatcaacttcactttatcatcaccttcatgatact 26312255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 30643130 - 30643044
Alignment:
Q  39 tacattcagaatctcagttgatctatgagctgtgtttgaacttaatgcatttctaggttgcttgtctatcaagcaaacatcacaaac 125  Q
    |||||||||||||||  ||||||||||||| || || ||  | ||||||| ||||||||||||  |||||||||||  |||||||||    
T  30643130 tacattcagaatctcttttgatctatgagcagtattggatttaaatgcatctctaggttgcttccctatcaagcaagtatcacaaac 30643044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 565 - 628
Target Start/End: Complemental strand, 36617875 - 36617812
Alignment:
Q  565 ttcaatcttcatggttttcatgtcctttgattcttaaatagccataactatgaaatcaaatctt 628  Q
    |||||||||||| |||||||  ||||||||||||| |||  | | |||||||||||||||||||    
T  36617875 ttcaatcttcatagttttcacatcctttgattcttgaatgacaacaactatgaaatcaaatctt 36617812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 517
Target Start/End: Complemental strand, 26313167 - 26313053
Alignment:
Q  403 tgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttccca 502  Q
    ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  | ||| ||| |||| |||||||| ||||| || ||||    
T  26313167 tgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattctttccttcaatagcaatattcccca 26313068  T
Q  503 tgccttctgcaacca 517  Q
    | |||||||||||||    
T  26313067 ttccttctgcaacca 26313053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 517
Target Start/End: Complemental strand, 39795549 - 39795435
Alignment:
Q  403 tgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttccca 502  Q
    ||||||||||| ||||| || || ||||| |||| |||||| |  || ||||||||||| |  | ||| ||| |||| |||||||| ||||| || ||||    
T  39795549 tgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattctttccttcaatagcaatattcccca 39795450  T
Q  503 tgccttctgcaacca 517  Q
    | |||||||||||||    
T  39795449 ttccttctgcaacca 39795435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 591 - 824
Target Start/End: Original strand, 54093 - 54325
Alignment:
Q  591 ttgattcttaaatagccataactatgaaatcaaatcttggggatagagttcacatgatcttctaaacaatatgttaatctgaaattgtttaactgcatgt 690  Q
    ||||||||| ||| || | ||||||||| | ||||||||| ||||| |||| ||| ||||| | |||||| |||| |||  |||||||   ||| ||||     
T  54093 ttgattcttgaattgctacaactatgaagttaaatcttggtgatagggttctcattatcttttcaacaatttgttgatcataaattgtcccactccatgc 54192  T
Q  691 gttcatctgattgaaaatattaatcagtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactga 790  Q
     ||| ||||||| | ||| || |||| |||| | |||||||||||||| || ||||  |||||||| |  ||||||| ||||||||| || | ||| |||    
T  54193 cttcctctgattcacaatgttgatcactttg-agatgtaatcaacaatcttatgatattcttccatttatatcagttgaaatttcctcctcaaagattga 54291  T
Q  791 agcttgatctgctttaccttttcatcacattcat 824  Q
    |||||||||||||| ||||||||||||| |||||    
T  54292 agcttgatctgcttcaccttttcatcaccttcat 54325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 717 - 830
Target Start/End: Original strand, 64579 - 64692
Alignment:
Q  717 gtttggatatgtaatcaacaattttttgatcatcttccatctgcatcagttcaaatttccttcttagagactgaagcttgatctgctttaccttttcatc 816  Q
    ||||||| ||||| |||  ||| || ||||||||||||||||||||||| ||||||||||| || || || |||||||| |||   || ||||| |||||    
T  64579 gtttggagatgtattcagaaatcttctgatcatcttccatctgcatcagctcaaatttcctcctcagtgattgaagcttaatcaatttcaccttatcatc 64678  T
Q  817 acattcatgatact 830  Q
    || |||||||||||    
T  64679 accttcatgatact 64692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University