View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3740_low_10 (Length: 326)
Name: NF3740_low_10
Description: NF3740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3740_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 309
Target Start/End: Complemental strand, 39109052 - 39108754
Alignment:
| Q |
11 |
cagagaaacacttgaagtagctctgatctggagcagaggaatccgatgaagaaagtaacttcacaccttctcttgaaagctgttgagaagaaccatcaga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39109052 |
cagagaaacacttgaagtagctctgatctggagcagaggaatccgatgaagaaagtaacttcacaccttctcttgaaagctgttgagaagaaccatcaga |
39108953 |
T |
|
| Q |
111 |
agaagaagaaacagagccagaatcatcattagccattttcaaacttggaatataatcttgaagcatatttgctacgtctttgaatcttctcaaatagagc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39108952 |
agaagaagaaacagagccagaatcatcattagccattttcaaacttggaatataatcttgaagcatatttgctacgtctttgaatcttctcaaatagagc |
39108853 |
T |
|
| Q |
211 |
aaagatcttgctttcatctctagggcttgatctgaacttggagaaatagctaaagctgagtctagaagacttatagctgaaacaatctcgtttcgttct |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39108852 |
aaagatcttgctttcatctctagggcttgatctgaacttggagaaatagctaaagctgagtctagaagacttatagctgaaacaatctcgtttcgttct |
39108754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 200
Target Start/End: Original strand, 44707989 - 44708081
Alignment:
| Q |
108 |
agaagaagaagaaacagagccagaatcatcattagccattttcaaacttggaatataatcttgaagcatatttgctacgtctttgaatcttct |
200 |
Q |
| |
|
||||||||||||| ||||| || ||| ||||||| |||| ||||||| ||||| || ||||||||||||| || || |||||||||||||| |
|
|
| T |
44707989 |
agaagaagaagaaccagaggaaggatcttcattagtcattctcaaactcggaatgtagtcttgaagcatatcagcaacatctttgaatcttct |
44708081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 47057730 - 47057663
Alignment:
| Q |
135 |
atcattagccattttcaaacttggaatataatcttgaagcatatttgctacgtctttgaatcttctca |
202 |
Q |
| |
|
|||||| |||||||||||| | |||||||| ||||||||||||| ||| || || ||||| ||||||| |
|
|
| T |
47057730 |
atcatttgccattttcaaattaggaatatagtcttgaagcatatctgcaacatccttgaaccttctca |
47057663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 13720336 - 13720402
Alignment:
| Q |
147 |
tttcaaacttggaatataatcttgaagcatatttgctacgtctttgaatcttctcaaatagagcaaa |
213 |
Q |
| |
|
||||| || ||| |||| ||| ||||||||||||| ||| |||| ||| |||||||||||||||||| |
|
|
| T |
13720336 |
tttcatacatggtatatcatcctgaagcatatttgttacatcttcgaaccttctcaaatagagcaaa |
13720402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University