View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3740_low_11 (Length: 318)

Name: NF3740_low_11
Description: NF3740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3740_low_11
NF3740_low_11
[»] chr3 (1 HSPs)
chr3 (19-311)||(39307803-39308095)


Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 39308095 - 39307803
Alignment:
Q  19 agaagaaccacgaaccctttgaaagttagctctaagatacataagttgatcatcttcttgacaaatctcttttccatttataacaccagtaccaacagaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39308095 agaagaaccacgaaccctttgaaagttagctctaagatacataagttgatcatcttcttgacaaatctcttttccatttataacaccagtaccaacagaa 39307996  T
Q  119 accgaccgcatcaagttaagtgcttctaaatcgcttcttgaaggcttacgcttaaccgaatacccgactttcctcccattacagtacataatccatagag 218  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39307995 accgaccgcatcaagttaagtgcttctaaatcacttcttgaaggcttacgcttaaccgaatacccgactttcctcccattacagtacataatccaaagag 39307896  T
Q  219 gagttgaaaacaagttactgttattgttacaagatcctgaggtagcactttctagcacaattctcaacgttcctcctctcatttcctttgcta 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39307895 gagttgaaaacaagttactgttattgttacaagatcctgaggtagcactttctagcacaattctcaacgttcctcctctcatttcctttgcta 39307803  T

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