View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3740_low_12 (Length: 303)

Name: NF3740_low_12
Description: NF3740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3740_low_12
NF3740_low_12
[»] chr5 (3 HSPs)
chr5 (24-286)||(14066856-14067122)
chr5 (216-258)||(24092620-24092662)
chr5 (214-250)||(38045335-38045371)
[»] chr2 (5 HSPs)
chr2 (213-263)||(11759797-11759847)
chr2 (199-263)||(6948480-6948544)
chr2 (217-250)||(3853963-3853996)
chr2 (217-250)||(8170375-8170408)
chr2 (217-249)||(25747894-25747926)
[»] chr8 (3 HSPs)
chr8 (217-252)||(33588780-33588815)
chr8 (217-263)||(36779440-36779486)
chr8 (214-250)||(10552920-10552956)
[»] chr3 (5 HSPs)
chr3 (217-252)||(25181262-25181297)
chr3 (216-253)||(2300537-2300574)
chr3 (217-250)||(48189456-48189489)
chr3 (209-241)||(32523268-32523300)
chr3 (215-263)||(53567973-53568021)
[»] chr7 (3 HSPs)
chr7 (217-250)||(32187015-32187048)
chr7 (217-250)||(41715732-41715765)
chr7 (215-263)||(41625512-41625560)
[»] chr6 (1 HSPs)
chr6 (215-252)||(25208734-25208771)
[»] chr4 (2 HSPs)
chr4 (217-250)||(36150643-36150676)
chr4 (217-250)||(48550256-48550289)
[»] chr1 (2 HSPs)
chr1 (217-250)||(10470667-10470700)
chr1 (217-250)||(27801667-27801700)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 24 - 286
Target Start/End: Original strand, 14066856 - 14067122
Alignment:
Q  24 cttcaacgttcaataaaatcaattgcaatttaacatcaacctctaagtcaagtttaaccttcattatttcaccaataaagcattttattatttatgataa 123  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  14066856 cttcaatgttcaatcaaatcaattgcaatttaacatcaacctctaagtcaagtttaaccttcattatttcaccaataaagcattttataatttatgataa 14066955  T
Q  124 tggatggagaaaagggtcaacttgctggttcgaaaagagtgtgtgtgttcggctctgaagtaatga------nnnnnnnnnaatgaaatggttaggtaaa 217  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||    
T  14066956 tggatggagaaaagggtcaacttgttggttcgaaaagagtgtgtgtgttcggctctgaagtaatgatttttttttttttttaatgaaatggttaggtaaa 14067055  T
Q  218 attgattttgattaaaagtgagttaaatgtaaaatagtttgtgtttttgctttcatggtagaatgccct 286  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||| || |||||||||||    
T  14067056 attgattttgattaaaagtgagttaaatgtaaaatagtt--tgtttttgctttcttgatagaatgccct 14067122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 24092620 - 24092662
Alignment:
Q  216 aaattgattttgattaaaagtgagttaaatgtaaaatagtttg 258  Q
    |||||||||||| |||||| ||||||||||||||| |||||||    
T  24092620 aaattgattttggttaaaaatgagttaaatgtaaagtagtttg 24092662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 38045371 - 38045335
Alignment:
Q  214 taaaattgattttgattaaaagtgagttaaatgtaaa 250  Q
    |||||||||||||  ||||||||||||||||||||||    
T  38045371 taaaattgattttagttaaaagtgagttaaatgtaaa 38045335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 11759797 - 11759847
Alignment:
Q  213 gtaaaattgattttgattaaaagtgagttaaatgtaaaatagtttgtgttt 263  Q
    ||||||||||||||||||||||||||||| || ||||| | ||||||||||    
T  11759797 gtaaaattgattttgattaaaagtgagttgaaggtaaattggtttgtgttt 11759847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 6948480 - 6948544
Alignment:
Q  199 aatgaaatggttaggtaaaattgattttgattaaaagtgagttaaatgtaaaatagtttgtgttt 263  Q
    |||||| |||||| |||||||||||||||||| ||| |||||| || |||||||| ||| |||||    
T  6948480 aatgaattggttatgtaaaattgattttgattgaaattgagttgaaggtaaaataatttttgttt 6948544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 3853996 - 3853963
Alignment:
Q  217 aattgattttgattaaaagtgagttaaatgtaaa 250  Q
    ||||||||||||||||||||||||| ||||||||    
T  3853996 aattgattttgattaaaagtgagttgaatgtaaa 3853963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 8170408 - 8170375
Alignment:
Q  217 aattgattttgattaaaagtgagttaaatgtaaa 250  Q
    ||||||||||||||||||||||||| ||||||||    
T  8170408 aattgattttgattaaaagtgagttgaatgtaaa 8170375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 25747894 - 25747926
Alignment:
Q  217 aattgattttgattaaaagtgagttaaatgtaa 249  Q
    ||||||||||||||||||||||||| |||||||    
T  25747894 aattgattttgattaaaagtgagttgaatgtaa 25747926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 252
Target Start/End: Complemental strand, 33588815 - 33588780
Alignment:
Q  217 aattgattttgattaaaagtgagttaaatgtaaaat 252  Q
    ||||||||||||||||||||||||| ||||||||||    
T  33588815 aattgattttgattaaaagtgagtttaatgtaaaat 33588780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 36779486 - 36779440
Alignment:
Q  217 aattgattttgattaaaagtgagttaaatgtaaaatagtttgtgttt 263  Q
    ||||||||||||||||||||||||| |||||||| || ||| |||||    
T  36779486 aattgattttgattaaaagtgagttgaatgtaaagtaatttatgttt 36779440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 10552920 - 10552956
Alignment:
Q  214 taaaattgattttgattaaaagtgagttaaatgtaaa 250  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  10552920 taaaattgattttggttaaaagtgagttgaatgtaaa 10552956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 252
Target Start/End: Complemental strand, 25181297 - 25181262
Alignment:
Q  217 aattgattttgattaaaagtgagttaaatgtaaaat 252  Q
    ||||||||||||||||||||||||| ||||||||||    
T  25181297 aattgattttgattaaaagtgagtttaatgtaaaat 25181262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 253
Target Start/End: Original strand, 2300537 - 2300574
Alignment:
Q  216 aaattgattttgattaaaagtgagttaaatgtaaaata 253  Q
    |||||||| || ||||||||||||||||||||||||||    
T  2300537 aaattgatgttaattaaaagtgagttaaatgtaaaata 2300574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 48189456 - 48189489
Alignment:
Q  217 aattgattttgattaaaagtgagttaaatgtaaa 250  Q
    ||||||||||||||||||||||||| ||||||||    
T  48189456 aattgattttgattaaaagtgagttgaatgtaaa 48189489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 32523268 - 32523300
Alignment:
Q  209 ttaggtaaaattgattttgattaaaagtgagtt 241  Q
    |||||||||||||||||||||||||||| ||||    
T  32523268 ttaggtaaaattgattttgattaaaagttagtt 32523300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 53568021 - 53567973
Alignment:
Q  215 aaaattgattttgattaaaagtgagttaaatgtaaaatagtttgtgttt 263  Q
    ||||||||||||||||||||||||||| |||| ||| || ||| |||||    
T  53568021 aaaattgattttgattaaaagtgagttgaatgaaaagtaatttatgttt 53567973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 32187048 - 32187015
Alignment:
Q  217 aattgattttgattaaaagtgagttaaatgtaaa 250  Q
    |||||||||||||||||||||||||| |||||||    
T  32187048 aattgattttgattaaaagtgagttagatgtaaa 32187015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 41715765 - 41715732
Alignment:
Q  217 aattgattttgattaaaagtgagttaaatgtaaa 250  Q
    |||||||||||||||||||||||||| |||||||    
T  41715765 aattgattttgattaaaagtgagttagatgtaaa 41715732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 41625512 - 41625560
Alignment:
Q  215 aaaattgattttgattaaaagtgagttaaatgtaaaatagtttgtgttt 263  Q
    |||||||||||||||||||||||| || | |||||| || |||||||||    
T  41625512 aaaattgattttgattaaaagtgacttgagtgtaaattaatttgtgttt 41625560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 25208771 - 25208734
Alignment:
Q  215 aaaattgattttgattaaaagtgagttaaatgtaaaat 252  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  25208771 aaaattgattttaattaaaagtgagttgaatgtaaaat 25208734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 36150676 - 36150643
Alignment:
Q  217 aattgattttgattaaaagtgagttaaatgtaaa 250  Q
    ||||||||||||||||||||||||| ||||||||    
T  36150676 aattgattttgattaaaagtgagttgaatgtaaa 36150643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 48550289 - 48550256
Alignment:
Q  217 aattgattttgattaaaagtgagttaaatgtaaa 250  Q
    |||||||||||||||||||||||||| |||||||    
T  48550289 aattgattttgattaaaagtgagttagatgtaaa 48550256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 10470700 - 10470667
Alignment:
Q  217 aattgattttgattaaaagtgagttaaatgtaaa 250  Q
    ||||||||||||||||||||||||| ||||||||    
T  10470700 aattgattttgattaaaagtgagttgaatgtaaa 10470667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 27801667 - 27801700
Alignment:
Q  217 aattgattttgattaaaagtgagttaaatgtaaa 250  Q
    |||||||||||||||||||||||||| |||||||    
T  27801667 aattgattttgattaaaagtgagttagatgtaaa 27801700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University