View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3740_low_13 (Length: 292)
Name: NF3740_low_13
Description: NF3740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3740_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 39223731 - 39223467
Alignment:
| Q |
11 |
cacagagtgcatgcatatagatagaattaaatcaataaaggaaacgaaccaatggtgggagagagatcatcaaaatcatcagaggtgaatctgagaagaa |
110 |
Q |
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| T |
39223731 |
cacagagtgcatgcatatagatagaattaaatcaataaaggaaacgaaccaatggtgggagagagatcatcaaaatcatcagaggtgaatctgagaagaa |
39223632 |
T |
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| Q |
111 |
gactacttttgccaacaccagaatccccaatcattaacaatttgaacatataatcgaattcttgctgccctgaactcgaatccattgcaaaccaaccact |
210 |
Q |
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| T |
39223631 |
gactacttttgccaacaccagaatccccaatcattaacaatttgaacatataatcgaattcttgctgccctgaactcgaatccattgcaaaccaaccact |
39223532 |
T |
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| Q |
211 |
tttctgattctgattttgttctgttcacacacacatacacattaataagcatcgatgatttcatt |
275 |
Q |
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| T |
39223531 |
tttctgattctgattttgttctgttcacacacacatacacattaataagcatcgatgatttcatt |
39223467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 171
Target Start/End: Complemental strand, 44038147 - 44038064
Alignment:
| Q |
88 |
atcagaggtgaatctgagaagaagactacttttgccaacaccagaatccccaatcattaacaatttgaacatataatcgaattc |
171 |
Q |
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| T |
44038147 |
atcagaagtgaaacagaggaggagactactcttgccaacaccggagtctccaatcatcaacagtttgaacacataatcgaattc |
44038064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 144
Target Start/End: Complemental strand, 10110774 - 10110687
Alignment:
| Q |
57 |
aaccaatggtgggagagagatcatcaaaatcatcagaggtgaatctgagaagaagactacttttgccaacaccagaatccccaatcat |
144 |
Q |
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| T |
10110774 |
aaccaatagtgggagaaagatcttcgaagttatcagaagtgaatctcagaagcagcgtgcttttgccaacaccagaatcaccaatcat |
10110687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 40715932 - 40715974
Alignment:
| Q |
101 |
ctgagaagaagactacttttgccaacaccagaatccccaatca |
143 |
Q |
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| T |
40715932 |
ctgagaagaagactactcttgccaacaccagaatcaccaatca |
40715974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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