View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3740_low_18 (Length: 250)
Name: NF3740_low_18
Description: NF3740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3740_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 972902 - 972692
Alignment:
| Q |
19 |
aggatgatcaacttgcttaatgtgcttttgtatcctagtcctccaaaaattcttaatctcattgtcagttcttcctggaagatgctttgcaattttggac |
118 |
Q |
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| T |
972902 |
aggatgatcaacttgcttaatgtgcttttgtatcctagtcctccaaaaattcttaatctcattgtcagttcttcctggaagatgctttgcaattttggac |
972803 |
T |
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| Q |
119 |
cacctgcaatggtgaataatttgtataaaaagatagtgacatataactgaaaaagttattttcatgcttggctatatatatattagcaccttcactttgg |
218 |
Q |
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| T |
972802 |
cacctgcaatggtgaataatttgtataaaaagatagtgacatataactgaaaaagttattttcatgcttggctatatatatattagcaccttcactttgg |
972703 |
T |
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| Q |
219 |
atcaacctaat |
229 |
Q |
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| T |
972702 |
atcaacctaat |
972692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 13297874 - 13297769
Alignment:
| Q |
30 |
cttgcttaatgtgcttttgtatcctagtcctccaaaaattcttaatctcattgtcagttcttcctggaagatgctttgcaattttggaccacctgcaatg |
129 |
Q |
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| T |
13297874 |
cttgcttgatatgcttttggatccttgtcctccagtagttctttatctcattatcggttcttcccggtagatgtttcgcaattttcgaccacctgcattg |
13297775 |
T |
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| Q |
130 |
gtgaat |
135 |
Q |
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| T |
13297774 |
gtgaat |
13297769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 11747467 - 11747431
Alignment:
| Q |
60 |
tccaaaaattcttaatctcattgtcagttcttcctgg |
96 |
Q |
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| T |
11747467 |
tccataaattcttgatctcattgtcagttcttcctgg |
11747431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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