View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3740_low_19 (Length: 242)
Name: NF3740_low_19
Description: NF3740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3740_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 56393287 - 56393514
Alignment:
| Q |
1 |
cagagaaaacagagccctgagtaggctcactaccaagcataacttattggcgattttcttcagcacaaatagttgcatacactgattaaacatttgggag |
100 |
Q |
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| T |
56393287 |
cagagaaaacagacccctgagtaggctcactaccaagcatagcttcttggcgatttgcttcagcacaaacagttgcatacactgattgaacatttgggag |
56393386 |
T |
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| Q |
101 |
cggagtggtagcaaggatacgaccacaaactccatccaaatgtgaatccagcccgac--nnnnnnnntaaactcgttgggaattaaccatcttgttatac |
198 |
Q |
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| T |
56393387 |
cggagtggtagcaaggatacgaccacgaactccatccaaatgtgaatccagcccagccaaaaaaacataaactcgttgggaattaaccatcttgttatac |
56393486 |
T |
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| Q |
199 |
ttctc-aacatctttagggcattccatg |
225 |
Q |
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||||| |||||||||||||||||||||| |
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| T |
56393487 |
ttctctaacatctttagggcattccatg |
56393514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 27517525 - 27517751
Alignment:
| Q |
1 |
cagagaaaacagagccctgagtaggctcactaccaagcataacttattggcgattttcttcagcacaaatagttgcatacactgattaaacatttgggag |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||| |||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
27517525 |
cagagaaaacagacccctgagtaggctcactaccaagcatagcttcttggcgatttgcttcagcacaaacagttgcatacactgattgaacatttgggag |
27517624 |
T |
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| Q |
101 |
cggagtggtagcaaggatacgaccacaaactccatccaaatgtgaatccagcccgac--nnnnnnnntaaactcgttgggaattaaccatcttgttatac |
198 |
Q |
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| T |
27517625 |
cggagtggtagcaaggatacgaccacgaactccatccaaatgtgaatccagcccagccaaaaaaacataaactcgttgtgaattagccatcttgttatac |
27517724 |
T |
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| Q |
199 |
ttctcaacatctttagggcattccatg |
225 |
Q |
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||||||||||||||||||||||||||| |
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| T |
27517725 |
ttctcaacatctttagggcattccatg |
27517751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 150
Target Start/End: Original strand, 40457267 - 40457391
Alignment:
| Q |
26 |
ctcactaccaagcataacttattggcgattttcttcagcacaaatagttgcatacactgattaaacatttgggagcggagtggtagcaaggatacgacca |
125 |
Q |
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|||||||||||||||| ||| |||||||||| | |||||||||| | ||||||| || | || ||| ||||||| ||||| |||||||| | |||||| |
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| T |
40457267 |
ctcactaccaagcatagcttcttggcgatttgcctcagcacaaacaattgcataaacagcttgaacgcttgggagtggagttgtagcaagaacacgaccg |
40457366 |
T |
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| Q |
126 |
caaactccatccaaatgtgaatcca |
150 |
Q |
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| T |
40457367 |
cggactccatccaagtgtgaatcca |
40457391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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