View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3740_low_2 (Length: 469)

Name: NF3740_low_2
Description: NF3740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3740_low_2
NF3740_low_2
[»] chr7 (7 HSPs)
chr7 (33-266)||(25126481-25126714)
chr7 (289-456)||(25127852-25128019)
chr7 (119-266)||(7015599-7015746)
chr7 (119-266)||(7030957-7031104)
chr7 (119-266)||(7064585-7064732)
chr7 (152-259)||(7060143-7060250)
chr7 (294-334)||(38123796-38123836)
[»] scaffold1302 (1 HSPs)
scaffold1302 (152-266)||(854-968)
[»] chr5 (2 HSPs)
chr5 (294-338)||(15368136-15368180)
chr5 (294-338)||(37121478-37121522)
[»] chr3 (3 HSPs)
chr3 (294-338)||(52925759-52925803)
chr3 (294-338)||(25129670-25129714)
chr3 (299-335)||(35253557-35253593)
[»] chr8 (2 HSPs)
chr8 (294-338)||(4950378-4950422)
chr8 (294-338)||(41614737-41614781)
[»] chr6 (2 HSPs)
chr6 (298-334)||(19601714-19601750)
chr6 (294-338)||(29240600-29240644)
[»] chr2 (1 HSPs)
chr2 (294-338)||(7629755-7629799)
[»] chr1 (1 HSPs)
chr1 (294-338)||(20721063-20721107)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 33 - 266
Target Start/End: Original strand, 25126481 - 25126714
Alignment:
Q  33 tatccattcaaaatgaggttggcgtagaacagaacccctttgacacaagaataattctttgatcatttggcgctgctcttctggtagatttgaagaggta 132  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25126481 tatccattcaaaatgaggttggcgtagaacagaacccctttgaaacaagaataattctttgatcatttggcgctgctcttctggtagatttgaagaggta 25126580  T
Q  133 tttctgtaaatcttgatactgcgcaagactgttgcattttggataatatatttggtgaattgaagctcactttcgttgcctccataatttataaaagaga 232  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  25126581 tttctgtaaatcttgacactgctcaagactgttgcattttggataatatatttcgtgaattgaagctcactttcgttgcctccttaatttataaaagaga 25126680  T
Q  233 acatttgtagctgtgatgaaaagcattcggggac 266  Q
    ||||||||||||||||||||||||||||||||||    
T  25126681 acatttgtagctgtgatgaaaagcattcggggac 25126714  T

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Target: chr7; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 289 - 456
Target Start/End: Original strand, 25127852 - 25128019
Alignment:
Q  289 caatttctagaatcaattttgacgcctccaaaaatggaaccaaacatacagaatcactattcattgatgagtgaattaaaaagaaactctaacgagagac 388  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25127852 caatttctagaatcaattttgacgcctccaaaaatggaaccacacatacagaatcactattcattgatgagtgaattaaaaagaaactctaacgagagac 25127951  T
Q  389 aacaatgatcagagtgagaatttcattaaaaaagaaataatgggagtgagttgttacctttgtgatga 456  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  25127952 aacaatgatcagagtgagaatttcagtaaaaaaaaaataatgggagtgagttgttacctttgtgatga 25128019  T

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Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 119 - 266
Target Start/End: Original strand, 7015599 - 7015746
Alignment:
Q  119 gatttgaagaggtatttctgtaaatcttgatactgcgcaagactgttgcattttggataatatatttggtgaattgaagctcactttcgttgcctccata 218  Q
    |||||||||||||||||||||| ||  |||   |||||||||  ||||||||||||| || ||||||||||||||||||||| |||  ||||||||||||    
T  7015599 gatttgaagaggtatttctgtagatggtgacgttgcgcaagagagttgcattttggacaacatatttggtgaattgaagctcgcttaggttgcctccata 7015698  T
Q  219 atttataaaagagaacatttgtagctgtgatgaaaagcattcggggac 266  Q
    ||| |||||||||||||||||||| |||||||||| ||||| ||||||    
T  7015699 attaataaaagagaacatttgtagatgtgatgaaatgcattgggggac 7015746  T

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Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 119 - 266
Target Start/End: Original strand, 7030957 - 7031104
Alignment:
Q  119 gatttgaagaggtatttctgtaaatcttgatactgcgcaagactgttgcattttggataatatatttggtgaattgaagctcactttcgttgcctccata 218  Q
    |||||||||||||||||||||| ||  |||   |||||||||  ||||||||||||| || ||||||||||||||||||||| |||  ||||||||||||    
T  7030957 gatttgaagaggtatttctgtagatggtgacgttgcgcaagagagttgcattttggacaacatatttggtgaattgaagctcgcttaggttgcctccata 7031056  T
Q  219 atttataaaagagaacatttgtagctgtgatgaaaagcattcggggac 266  Q
    ||| |||||||||||||||||||| |||||||||| ||||| ||||||    
T  7031057 attaataaaagagaacatttgtagatgtgatgaaatgcattgggggac 7031104  T

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Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 119 - 266
Target Start/End: Original strand, 7064585 - 7064732
Alignment:
Q  119 gatttgaagaggtatttctgtaaatcttgatactgcgcaagactgttgcattttggataatatatttggtgaattgaagctcactttcgttgcctccata 218  Q
    ||||||||||||||||| |||| ||  |||   |||||||||  ||||||||||||| || ||||||||||||||||||||| |||  ||||||||| ||    
T  7064585 gatttgaagaggtatttgtgtagatggtgacgttgcgcaagagagttgcattttggacaacatatttggtgaattgaagctcgcttaggttgcctccgta 7064684  T
Q  219 atttataaaagagaacatttgtagctgtgatgaaaagcattcggggac 266  Q
    ||| |||||||||||||||||||| |||||||||| ||||| ||||||    
T  7064685 attaataaaagagaacatttgtagatgtgatgaaatgcattgggggac 7064732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 152 - 259
Target Start/End: Original strand, 7060143 - 7060250
Alignment:
Q  152 tgcgcaagactgttgcattttggataatatatttggtgaattgaagctcactttcgttgcctccataatttataaaagagaacatttgtagctgtgatga 251  Q
    |||||||||  ||||||||||||| || ||||||||||||||||||||| |||  ||||||||| ||||| |||||||||||||||||||| ||| ||||    
T  7060143 tgcgcaagagagttgcattttggacaacatatttggtgaattgaagctcgcttaggttgcctccgtaattaataaaagagaacatttgtagatgtaatga 7060242  T
Q  252 aaagcatt 259  Q
    || |||||    
T  7060243 aatgcatt 7060250  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 334
Target Start/End: Original strand, 38123796 - 38123836
Alignment:
Q  294 tctagaatcaattttgacgcctccaaaaatggaaccaaaca 334  Q
    |||||||||||||||| | ||||||||| ||||||||||||    
T  38123796 tctagaatcaattttggctcctccaaaagtggaaccaaaca 38123836  T

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Target: scaffold1302 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold1302
Description:

Target: scaffold1302; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 152 - 266
Target Start/End: Original strand, 854 - 968
Alignment:
Q  152 tgcgcaagactgttgcattttggataatatatttggtgaattgaagctcactttcgttgcctccataatttataaaagagaacatttgtagctgtgatga 251  Q
    |||||||||  ||||||||||||| || ||||||||||||||||||||| |||  ||||||||| ||||| |||||||||||||||||||| ||||||||    
T  854 tgcgcaagagagttgcattttggacaacatatttggtgaattgaagctcgcttaggttgcctccgtaattaataaaagagaacatttgtagatgtgatga 953  T
Q  252 aaagcattcggggac 266  Q
    || ||||| ||||||    
T  954 aatgcattgggggac 968  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 15368180 - 15368136
Alignment:
Q  294 tctagaatcaattttgacgcctccaaaaatggaaccaaacataca 338  Q
    |||||||||||||||| | ||||||||| ||||||||||||||||    
T  15368180 tctagaatcaattttggctcctccaaaagtggaaccaaacataca 15368136  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 37121522 - 37121478
Alignment:
Q  294 tctagaatcaattttgacgcctccaaaaatggaaccaaacataca 338  Q
    |||||||||||||||| | |||| | |||||||||||||||||||    
T  37121522 tctagaatcaattttggctcctctacaaatggaaccaaacataca 37121478  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 338
Target Start/End: Original strand, 52925759 - 52925803
Alignment:
Q  294 tctagaatcaattttgacgcctccaaaaatggaaccaaacataca 338  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||||    
T  52925759 tctagaatcaattttgactcctccaaaagtggaaccgaacataca 52925803  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 338
Target Start/End: Original strand, 25129670 - 25129714
Alignment:
Q  294 tctagaatcaattttgacgcctccaaaaatggaaccaaacataca 338  Q
    |||||||||||||||||| |||| |||| || |||||||||||||    
T  25129670 tctagaatcaattttgacccctcgaaaattgaaaccaaacataca 25129714  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 335
Target Start/End: Original strand, 35253557 - 35253593
Alignment:
Q  299 aatcaattttgacgcctccaaaaatggaaccaaacat 335  Q
    ||||||||||| | |||||||||||||||||||||||    
T  35253557 aatcaattttggcacctccaaaaatggaaccaaacat 35253593  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 4950422 - 4950378
Alignment:
Q  294 tctagaatcaattttgacgcctccaaaaatggaaccaaacataca 338  Q
    |||||||||||||||  | ||||||||| ||||||||||||||||    
T  4950422 tctagaatcaattttagcacctccaaaattggaaccaaacataca 4950378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 41614781 - 41614737
Alignment:
Q  294 tctagaatcaattttgacgcctccaaaaatggaaccaaacataca 338  Q
    |||||||||||||||| | ||| || |||||||||||||||||||    
T  41614781 tctagaatcaattttggctcctacacaaatggaaccaaacataca 41614737  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 334
Target Start/End: Complemental strand, 19601750 - 19601714
Alignment:
Q  298 gaatcaattttgacgcctccaaaaatggaaccaaaca 334  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  19601750 gaatcaattttgactcctccaaaagtggaaccaaaca 19601714  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 338
Target Start/End: Original strand, 29240600 - 29240644
Alignment:
Q  294 tctagaatcaattttgacgcctccaaaaatggaaccaaacataca 338  Q
    |||||||||||||||||  || |||||| ||||||||||||||||    
T  29240600 tctagaatcaattttgattcccccaaaagtggaaccaaacataca 29240644  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 7629799 - 7629755
Alignment:
Q  294 tctagaatcaattttgacgcctccaaaaatggaaccaaacataca 338  Q
    |||||||||||| ||| | ||||||||| ||||||||||||||||    
T  7629799 tctagaatcaatcttggctcctccaaaagtggaaccaaacataca 7629755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 338
Target Start/End: Original strand, 20721063 - 20721107
Alignment:
Q  294 tctagaatcaattttgacgcctccaaaaatggaaccaaacataca 338  Q
    |||||||||||||||||  ||||||||| |||||| |||||||||    
T  20721063 tctagaatcaattttgattcctccaaaagtggaacaaaacataca 20721107  T

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