View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3740_low_21 (Length: 235)
Name: NF3740_low_21
Description: NF3740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3740_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 2245110 - 2244925
Alignment:
| Q |
14 |
caaaaacaaaccaaagatgattctagcagccaatacagtcttaccggattcattccatctctcggtgccgccaccatgtatggcagcaagagacaagagc |
113 |
Q |
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| T |
2245110 |
caaaaacaaaccaaagatgattctagcagccaatacagtcttaccggattcattccatctctcggtgccgccaccatgtatggcagcaagagacaagagc |
2245011 |
T |
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| Q |
114 |
tccggcgatacatcatctccccaagcaaccgttattataggtaagatttattcaactgtcaataacaactcatttttctatttcaa |
199 |
Q |
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| T |
2245010 |
tccggcgttacatcatctccccaagcaaccgttattataggtaagatttattcaactgtcaataacaactcatttttctatttcaa |
2244925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 2244811 - 2244772
Alignment:
| Q |
196 |
tcaatatgtatattatggtcaatgttttttaaaacccatc |
235 |
Q |
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| T |
2244811 |
tcaatatgtatattatggtcaatgttttttaaaacccatc |
2244772 |
T |
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