View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3740_low_22 (Length: 233)
Name: NF3740_low_22
Description: NF3740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3740_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 1201675 - 1201900
Alignment:
| Q |
1 |
tttggcttctctccatgttgtgaaatttaaagaagttaatggagacaatcatgatctatttttggctaaattttttatgaaaaatagcattagcttggag |
100 |
Q |
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| T |
1201675 |
tttggcttctctccatgttgtgaaatttaaagaagttaatggagacaatcatgatctatttttggctaaattttttatgaaaaatggcattagcttggag |
1201774 |
T |
|
| Q |
101 |
aagatgtgtttctcccttgctagtcaactcctgcgcaaaaacaaagctgtggaaaaatttaagaagaagttgtactcatttcgtaattttgattctgttg |
200 |
Q |
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| T |
1201775 |
aagatgtgtttctcccttgctagtcaactcctgcgcaaaaacaaagctgtggaaaaatttaagaagaagttgtactcatttcgtaattttgattctgttg |
1201874 |
T |
|
| Q |
201 |
ttgaacttaaggagaactagaaggtagatt |
230 |
Q |
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| |||||||||||||||||||||||| |
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| T |
1201875 |
----atttaaggagaactagaaggtagatt |
1201900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 1215070 - 1215258
Alignment:
| Q |
1 |
tttggcttctctccatgttgtgaaatttaaagaagttaatggagacaatcatgatctatttttggctaaattttttatgaaaaatagcattagcttggag |
100 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||| ||| |||||||| || | ||||||| |
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| T |
1215070 |
tttggcttctctccatgttgtgaaatttgaagaagttaatggagacaatcatgagatatttttagctaaattctttgtgaaaaatgttatgatcttggag |
1215169 |
T |
|
| Q |
101 |
aagatgtgtttctcccttgctagtcaactcctgcgcaaaaacaaagctgtggaaaaatttaagaagaagttgtactcatttcgtaattt |
189 |
Q |
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| T |
1215170 |
aagatgtgtttctctcttgctagtcaaatcccggacaaagatgaggttatggaagaatttaaggagaagttgtcctcatttcataattt |
1215258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 929277 - 929149
Alignment:
| Q |
1 |
tttggcttctctccatgttgtgaaatttaaagaagttaatggagacaatcatgatctatttttggctaaattttttatgaaaaatagcattagcttgga- |
99 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||| |||| | ||||| |
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| T |
929277 |
tttggcttctctctatgttgtgaaatttaaagaagttattggagacgatcatgatctatttttggctaaattttttattgaaaatggcatgatattggag |
929178 |
T |
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| Q |
100 |
--gaagatgtgtttctcccttgctagtca |
126 |
Q |
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|| ||||||||||||| |||||||||| |
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| T |
929177 |
atgatgatgtgtttctccgttgctagtca |
929149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 1207809 - 1207935
Alignment:
| Q |
1 |
tttggcttctctccatgttgtgaaatttaaagaagttaatggagacaatcatgatctatttttggctaaattttttatgaaaaatagcattagcttggag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||| || |||| ||| ||||||| || ||||| | || ||||||| |
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| T |
1207809 |
tttggcttctctccatgttgtgaaatttgaagaagttaatggagatgatcatgagttaattttagctcaatttttggtggaaaatggtatggtcttggag |
1207908 |
T |
|
| Q |
101 |
aagatgtgtttctcccttgctagtcaa |
127 |
Q |
| |
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| ||||||||||||||| | ||||||| |
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|
| T |
1207909 |
aggatgtgtttctccctggttagtcaa |
1207935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 8188550 - 8188437
Alignment:
| Q |
1 |
tttggcttctctccatgttgtgaaatttaaagaagttaatggagacaatcatgatctatttttggctaaattttttatgaaaaatagcattagcttggag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||| ||||||| |||| |||||||||| ||||| | || | ||||||| |
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| T |
8188550 |
tttggcttctctccatgttgtgaaatttgaagaaattaatagagacgatcatgagttatttttagctacattttttatggaaaatggtatgatcttggag |
8188451 |
T |
|
| Q |
101 |
aagatgtgtttctc |
114 |
Q |
| |
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| ||||||||||| |
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| T |
8188450 |
agtatgtgtttctc |
8188437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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