View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3740_low_4 (Length: 424)
Name: NF3740_low_4
Description: NF3740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3740_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 9 - 404
Target Start/End: Original strand, 10520075 - 10520466
Alignment:
| Q |
9 |
agcagagatagaatctgcagtgggagcattaatgagccatttgagatgggtaaagctacctggttgttttttcaaggcacgaacttcactgacccatgac |
108 |
Q |
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| T |
10520075 |
agcagtgatagaatctgcagtgggagcattaatgagccatttgagatgggtaaagctacctggttgttttttcaaggcacgaacttcactgacccatgac |
10520174 |
T |
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| Q |
109 |
tcttgtttaatataagactcatgctccttatcaagtttaataatatcctttctagcatcctccatcaaatcgacatcacccgaataaagcatctccctca |
208 |
Q |
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| T |
10520175 |
tcttgtttaatataagactcatgctccttatcacgcttaataatatcctttctagcatcctccatcaaatcgacatgacccgaataaagcatctccctca |
10520274 |
T |
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| Q |
209 |
atgtgagagtcaccttagaagggtccagaagccccgaaatccagacattgcgcagccgcgccggtgagaagtgatcgagtggggtgggaagaatgagaag |
308 |
Q |
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| T |
10520275 |
atgtgagagtcaccttagaagggtccagaagccccgaaatccagacattgcgcagccgcgccggtgagaagt----gagtggggtgggaagaatgagaag |
10520370 |
T |
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| Q |
309 |
tggtggaggtgtagtagtagcggaggcgctgtaaggagtatttcgagaaacgagccatgtttgaaggtggaagatggatgggtaaaacccttgggg |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10520371 |
tggtggaggtgtagtagtagcggaggcgctgtaaggagcatttcgagaaacgagccatgtttgaaggtggaagatggatgggtaaaacccttgggg |
10520466 |
T |
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