View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3740_low_6 (Length: 375)
Name: NF3740_low_6
Description: NF3740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3740_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 6 - 360
Target Start/End: Complemental strand, 52454766 - 52454412
Alignment:
| Q |
6 |
tgaataatgagcttagaaataatgggaatggaattgttatgtttgataaatatgtagatgttggtggtggacaacgttggattgatgtgttgcatgcaag |
105 |
Q |
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| T |
52454766 |
tgaataatgagcttagaaataatgggaatggaattgttgtgtttgataaatatgtagatgttggtggtggacaacgttggattgatgtgttgcatgcaag |
52454667 |
T |
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| Q |
106 |
ccttgaaaaaggacttacaccactttcttggactgattatttgtatttatcggttggtggaactctctctaatgctggtattagtggacaaaccttccga |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52454666 |
ccttgaaaaaggacttacaccactttcttggactgattatttgtatttatcggttggtggaactctctctaatgctggtattagtggacaaaccttccga |
52454567 |
T |
|
| Q |
206 |
tttggtcctcaaatttccaatgttcatgaattggatgttgttactggtacgtatgaatcgaatcattcttttctttcataattctctccctcctagttcc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52454566 |
tttggtcctcaaatttccaatgttcatgaattggatgttgttactggtacgtatgaatcgaatcattcttttctttcataattctctccctcctagttcc |
52454467 |
T |
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| Q |
306 |
tacaattaataggtgatgtttttaggttattgacagattaggttgggttggtttt |
360 |
Q |
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| T |
52454466 |
tacaattaatagatgatgtttttaggttattgacagattaggttgggttggtttt |
52454412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 254
Target Start/End: Original strand, 52443404 - 52443602
Alignment:
| Q |
56 |
tatgtagatgttggtggtggacaacgttggattgatgtgttgcatgcaagccttgaaaaaggacttacaccactttcttggactgattatttgtatttat |
155 |
Q |
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| T |
52443404 |
tatgttgatgttggaggagaacaactatggattgatgttttgtatgcaacacttgaacatggacttgcacctgtttcttggactgactatctttacctca |
52443503 |
T |
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| Q |
156 |
cggttggtggaactctctctaatgctggtattagtggacaaaccttccgatttggtcctcaaatttccaatgttcatgaattggatgttgttactggta |
254 |
Q |
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||||||| ||||| || || |||||||| |||||||| || || || | | || |||||||| |||| ||||||||||| ||||| ||||||||| |
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| T |
52443504 |
cggttggaggaacactttccaatgctggaattagtggccagacgtttctttacggacctcaaatcaccaacgttcatgaattcgatgtgattactggta |
52443602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 56 - 259
Target Start/End: Original strand, 17275565 - 17275768
Alignment:
| Q |
56 |
tatgtagatgttggtggtggacaacgttggattgatgtgttgcatgcaagccttgaaaaaggacttacaccactttcttggactgattatttgtatttat |
155 |
Q |
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| T |
17275565 |
tatgttgatgttggaggggaacaactatggattgatgtgttgtatgaaacacttgagtatggacttgcacctgtttcttggactgattatctttacttaa |
17275664 |
T |
|
| Q |
156 |
cggttggtggaactctctctaatgctggtattagtggacaaaccttccgatttggtcctcaaatttccaatgttcatgaattggatgttgttactggtac |
255 |
Q |
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| |||| || || |||||||||||||||||||||||||||||||| || | ||||||||||||| | | ||||||| ||||||||||||||||||||| |
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| T |
17275665 |
ctattggagggacactctctaatgctggtattagtggacaaacctttcgttatggtcctcaaattactagtgttcatcaattggatgttgttactggtat |
17275764 |
T |
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| Q |
256 |
gtat |
259 |
Q |
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|||| |
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| T |
17275765 |
gtat |
17275768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 116 - 249
Target Start/End: Original strand, 17243422 - 17243555
Alignment:
| Q |
116 |
ggacttacaccactttcttggactgattatttgtatttatcggttggtggaactctctctaatgctggtattagtggacaaaccttccgatttggtcctc |
215 |
Q |
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||||| ||||| || |||||||||||||| |||||||| || |||||||| ||||||||||||||||| ||| | || ||||| || ||||||| || | |
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| T |
17243422 |
ggactcacacctctctcttggactgattacttgtatttgtctgttggtggcactctctctaatgctggaattgggggccaaacttttagatttggaccac |
17243521 |
T |
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| Q |
216 |
aaatttccaatgttcatgaattggatgttgttac |
249 |
Q |
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|||| |||||||||| ||||||||||||| |||| |
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| T |
17243522 |
aaatctccaatgttcttgaattggatgttattac |
17243555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 52630637 - 52630566
Alignment:
| Q |
131 |
tcttggactgattatttgtatttatcggttggtggaactctctctaatgctggtattagtggacaaaccttc |
202 |
Q |
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|||||||||||||| |||||||| || || ||||| ||||| ||||||| |||||||||||| ||||||||| |
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| T |
52630637 |
tcttggactgattacttgtatttgtctgtgggtggtactctatctaatggtggtattagtggccaaaccttc |
52630566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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