View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3740_low_8 (Length: 341)
Name: NF3740_low_8
Description: NF3740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3740_low_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 333
Target Start/End: Original strand, 1865715 - 1866032
Alignment:
| Q |
17 |
tggtgctgatggaaaagttgcgggg-ttaatccaaatatcggagatgcatctgttacaccaatcactaatgttgaacctaactcacgttctatgaatgga |
115 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1865715 |
tggtgctgatggaaaagttgcgggggttaatccaaatatcggagatgcatatgttacaccaatcactaatgttgaacctaactcacgttctgtgaatgga |
1865814 |
T |
|
| Q |
116 |
gcaattctggatcatacaaagacttcttctaatgaactattgtctagaaattttagctttccagaagagtcttctcatgcttctttgtttttaggtatgt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1865815 |
gcaattctggatcatacaaagacttcttctaatgaactattgtctagaaattttagctttccagaagagtcttctcatgcttctttgtttttaggtatgt |
1865914 |
T |
|
| Q |
216 |
attctctcttatgtttatgtggattaatgtgacccatttttcaattgttacatataaaaatgtattcttagttacaaagtatagtttgaattaatcaatg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1865915 |
attctctcttatgtttatgtggattaatgtgacccatttttcaattgttacatataaaaatgtattcttagttacaaagtatagtttgaattaatcaatg |
1866014 |
T |
|
| Q |
316 |
caggtagtagttcatctc |
333 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
1866015 |
caggtagtagttcatctc |
1866032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University