View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3740_low_9 (Length: 330)
Name: NF3740_low_9
Description: NF3740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3740_low_9 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 972212 - 972541
Alignment:
| Q |
1 |
tttccattgtatcatcaaagacaatagtctttttatatgtgaagtctaacatgcacatcacttttattctcaaccaaagaacatggtcttacttgaacac |
100 |
Q |
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| T |
972212 |
tttccattgtatcatcaaagacaatagtctttttatatgtgaagtctaacatgcacatcacttttattctcaaccaaagaacatggtcttacttgaacac |
972311 |
T |
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| Q |
101 |
atgacacctatttaatatttttgttgctactttttgcttatcaataaaatgtgcaccatttgacagcttttaattaatatccacttgttgcatttctttt |
200 |
Q |
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| T |
972312 |
atgacacctatttaatatttttgttgctactttttgcttatcaataaaatgtgcaccatttgacagcttttaattaatatccacttgttgcatttctttt |
972411 |
T |
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| Q |
201 |
tcaagaaacttcatatataattccacacatgcacatttttctatgagccacctatatctcctcattttacacatggttttcaaacataccacgttcattt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
972412 |
tcaagaaacttcatatataattccacacatgcacatttttctatgagccacctatatctcctcattttacatatggttttcaaacataccatgttcattt |
972511 |
T |
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| Q |
301 |
tataaaaaggttttaaatatacttagtctc |
330 |
Q |
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| T |
972512 |
tataaaaaggttttaaatatacttagtctc |
972541 |
T |
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