View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3741_high_2 (Length: 334)
Name: NF3741_high_2
Description: NF3741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3741_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 48137812 - 48138018
Alignment:
| Q |
12 |
agagattgaagggattggtatttctaactcgcatatcattccttttggaaatggcatgcaaaataaggaagttcaccaagaaaattattagagacccatg |
111 |
Q |
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| T |
48137812 |
agagattgaagggattggtatttctaactcgcatatcattccttttggaaatggcatgcaaaataaggaagttcaccaagaaaattattagagacccatg |
48137911 |
T |
|
| Q |
112 |
cgaccacatgtggaaattgctagatataccagtgattatggcttagaacttccaaatatgtggagctctttaatcacatgagatcgagatcaattgctta |
211 |
Q |
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| T |
48137912 |
cgaccacatgtggaaattgctagatatacgagtgattatggcttagaactttcaaatatgtggagctctttaatcacatgagatcgagatcaattgctta |
48138011 |
T |
|
| Q |
212 |
gtataaa |
218 |
Q |
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||||||| |
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| T |
48138012 |
gtataaa |
48138018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 213 - 318
Target Start/End: Original strand, 48138198 - 48138298
Alignment:
| Q |
213 |
tataaaataatcataaaagcatcttctaacaatataatcacctatgaattaaatctcatttatttatgctttaaaaaacgaagaatagattgcctaattt |
312 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
48138198 |
tataaaataatcataaaagcatcttctaacaat-----cacccatgaattaaatctcatttatttatgctttaaaaaacgaagaataggatgcctaattt |
48138292 |
T |
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| Q |
313 |
ttaaat |
318 |
Q |
| |
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|||||| |
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| T |
48138293 |
ttaaat |
48138298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 25249891 - 25249950
Alignment:
| Q |
159 |
acttccaaatatgtggagctctttaatcacatgagatcgagatcaattgcttagtataaa |
218 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
25249891 |
actttcaaatatgtggagctctttaatcacattagatcgagattaattgcttagtataaa |
25249950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 25250924 - 25250979
Alignment:
| Q |
263 |
aaatctcatttatttatgctttaaaaaacgaagaatagattgcctaatttttaaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25250924 |
aaatctcatttatttatgctttaaaaaacgaagaataggatgcctaatttttaaat |
25250979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 25250724 - 25250785
Alignment:
| Q |
213 |
tataaaataatcataaaagcatcttctaacaatataatcacctatgaattaaatctcatttatttat |
279 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25250724 |
tataaaataatcataaaagcatcttctaac-----aatcacctatgaattaaatctcatttatttat |
25250785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 25249832 - 25249864
Alignment:
| Q |
127 |
attgctagatataccagtgattatggcttagaa |
159 |
Q |
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|||||| |||||||||||||||||||||||||| |
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|
| T |
25249832 |
attgctggatataccagtgattatggcttagaa |
25249864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 40935538 - 40935453
Alignment:
| Q |
72 |
aaataaggaagttcaccaagaaaattattagagacccatgcgaccacatgtggaaattgctagatataccagtgattatggcttag |
157 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||| | || || |||||||||| |
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| T |
40935538 |
aaataaggaagttcatgaagaaaattagctgagacccatgcgaccacatatggaaattgctagatatgctagagactatggcttag |
40935453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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